SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32466

Length: 3235 nt

UniGene Fasta

>sp_v3.0_unigene32466
GTGAAATTTCACCCTTCGCTGGTTGGATCGTTGACCGGACTATCTCGTGTGTATATCCATAGCGGGACCGGTTGAAATGCCGCGGGAAGCTGGACAACTGGCAGTCATCTGTAGAGTGAACGATTGATTTCCGAGAGGAGAGGCAGAGGTGTATTTACCGGCGAGCAAGATCTAAAGAAAAAACAAGAACAAAAGTTACGGTGCGGACCTCACGGTTCTATACATGTCGCTTTACCTGCAATTATTTTGTTTTCGCCCTGGCAGACATTTGGGTTAAACCCCAACATCTGTGGACGGATAGATTGTCGCCGTTGATCTTGATCAGCCGTGAAGGCCTCTCGAGATACGCCGGCGTTAATGTCGAGGTCATGGTATAGAGAAACATTACATAGATTTGGATTGTATTTGCACAGCGCCAAGGTCTCCAAGAAAATTATAGGTTAGATGGAATGGAATGTGGTTATGGAAATTAGAATGACAGCGTACAGAGCGTAATTTGGTCGGCAATGACGGCGGATCGAGGCAGTGCTGGGTTTTGCGAGGCGATTGGCTTTTTCTGGTGCTTTTTTGGATGAAGTTGGCAGGTTTCCGTGCTTAATTCGAGGCGTAGAGGGTTTTGGGGGCTGAAACTGCTGTGAAATGAAGGGTTTGCGTGATATTCTGTCCAGGCCTGTGGTTTGGAGTAGCTGTGCAGGCGCGCGTGGTGATCAGCCGGAAATTAGCCTTGTTATTGATATAGGATGCCGTTTTTTTAATTTAAAAGTTAGGCGTTTAGTTTTATACATATATACAGAAATGGAAGCCACGAGAAGCTGGTTTCAGCGGTTTCAACCGAAATCAGACAGGCATAAAGCGGCGATGGGGAAAAAGAAGGAAGGGGAAAAGGGTAAAGATGGCCCCAGACCAGCTCACGACGAAGCTCCCTCAAACATCACTAAACAGAAAGTAGCTGCCGCCAAGCAATACATAGAGAACCACTACAAAGCTCAAATGAAGAATTTGCAGGAGCGCAAAGAGAGAAGATGGATTTTGGAACGTAAACTGGCAGATGCAGAAGTGTCTGAAGAGGAACAAAATAATCTCCTGAAATATCTGGAGAGAAAGGAGACAGAGTACATGCGTCTTCAACGGCATAAAATGGGTGTTGATGATTTTGAAATGTTGACTATTATTGGAAGGGGTGCTTTTGGGGAGGTGAGGTTGTGCAGAGAGAAGACAACAGGTAATGTCTATGCAATGAAAAAGTTGAAGAAGGCGGAGATGCTTCGTCGAGGCCAGGTGGAGCATGTGAAGGCAGAAAGGAATCTTCTTGCCGAGGTAGACAGTAATTGCATAGTTAAACTCTATTGCTCCTTCCAAGATGATGAGCATCTCTATCTTATAATGGAGTATTTACCTGGAGGAGATATGATGACACTGCTGATGCGGAAGGATACTTTGAAGGAGGATGAGGCAAGGTTTTATGTTGGACAGACGGTTTTGGCAATTGAGTCAATTCACAAGCACAATTACATTCACAGGGACATCAAACCAGATAATTTATTACTTGATAGATATGGACACATGAAGCTTTCAGATTTTGGTTTATGTAAACCATTGGACTGCACTAATCTACCCATTCTCCATGAAAATGACTTCACCGCTGGAAAAACTCTAAAAGATGTTTTGGATATGGATGGGCGTTTGAACACATCAACCACACCAAAGCGCACTCAACAGGAGCAGCTTTCACATTGGCAAAGGAACAGGCGCATGCTGGCTTATTCAACTGTTGGTACACCAGACTACATTGCCCCTGAAGTATTATTGAAGAAAGGCTATGGAAAGGAGTGCGATTGGTGGTCACTTGGAGCGATTATGTATGAAATGCTTATAGGTTATCCACCTTTTTATTCTGAAGAGCCAATGTCAACTTGTAGGAAGATAGTGAACTGGAGAACTCACCTTAAATTTCCAGAAGAAGCAAAGTTGTCAGCAGAGGCCAAAGATCTTATCAGTAAACTTCTTTGTAATGTAGAGCAGAGGCTTGGAACAAAAGGTGCCCATGAAATAAAGGCACATCCATGGTTTAAAGATGTTCAATGGGACAAATTATATCAGATGGAAGCAGCATTTTTGCCAGAGGTCAATAGTGAACTGGATACTCAGAATTTTGAGAAATTTGAAGAGGCTGGACCCCAAATGCAGTCTTCTTCAAGGTCAGGTCCATGGAGAAAGATGCTTTCGTCAAAGGATGTAAATTTTGTAGGTTATACCTACAAGAATTTTGAAATTGTCAATGATCATCAAGTACCTGGTGTTGCAGAGTTGAAGAAGAAAAGTAAACCTAAGCGGCCCTCCATCAAAACGTTATTTGACTCAACAGCTGTTGGTAGCCAACCTTACCAAGGAAGTTTTATGAATATGTTGCCAACACAAATTGAAACATCTGAGAGTCCAGAACCTTCTCCTCCAGGTAGTATGTCTTCACCAACTCGCTTGTGTTCTTTCCAGCAACAACCTTTGCGTCCAAGATGATTATATTCTGATCTGCTTTGTTAGTGTTGCCATGCATTGGTGACAGTATTGCAGTGTAAGTTGCATGTCCATATTTGTACTGAAGTTGGACCCTTGGGTAACCCATATGGGAACCTGTGGGCCAACTTTGTGCCATAATGTTGATATTATTAGTTTTTTTGATTAAGTTTCCTGATTTCTTAGAAGACCAAAATCTTGCAATAAATGTGCCTGCCTTTAGTCACAAGAGGCAGTCTTACTGGATTTTTATTGTTGCTTGTGGTTGTCATGCCAATGAGCGAGACTTGAATTCAGGATCACTCAAGTGATTGCTAGGGTTGTGGTATAAGCAATGAGCATACATTGCTATAATCAGTTTTCAAATCGTCTCCTTTTCTATGAATGGGGAGTTCTGTATATCAGTCTAAACTACTTAAGAAATTCTTTCAAGGTGTGTCATATATGTTTGCAAGGGGTCATATGCATATCTATGCTTTATTCGTTCAGACTTCGTCCTAGATTAGTTGCCTTGTTGGCATTGGAAATATATTCAACTCTTCACTGCCATTATGATTATGTTTCATGTACCAATCATGTTGTAGCGTTAGATAGATAAAACCAACATCTATTCTTCAAATATAGTGATTATTTTGGACAATGACCAAGGAAGAAAAGCAACACATTTGTCCTTAATAGATTGAGCCATTGCATCTGGTGGCTAAAATTTTTTTCAAAGTTT

Ace file of the UniGene sp_v3.0_unigene32466

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase [Triticum aestivum] dbj\|BAD19067.1\| protein kinase [Triticum aestivum] dbj\|BAD21354.1\| WNdr1A-like protein kinase [Triticum monococcum subsp. aegilopoides] dbj\|BAD21355.1\| WNdr1B-like protein kinase [Aegilops speltoides] dbj\|BAD21356.1\| WNd	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Chromosome chr10 scaffold_50, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00029861001;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14350.1	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein chr4:8256449-8259934 REVERSE LENGTH=551	74%
RefSeq	Arabidopsis thaliana	NP_001078388.1	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002311675.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTP9

Fln msg: your sequence is longer than subject: 626 - 138

Fln protein: MKGLRDILSRPVVWSSCAGARGDQPEISLVIDIGCRFFNLKVRRLVLYIYTEMEATRSWFQRFQPKSDRHKAAMGKKKEGEKGKDGPRPAHDEAPSNITKQKVAAAKQYIENHYKAQMKNLQERKERRWILERKLADAEVSEEEQNNLLKYLERKETEYMRLQRHKMGVDDFEMLTIIGRGAFGEVRLCREKTTGNVYAMKKLKKAEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEHLYLIMEYLPGGDMMTLLMRKDTLKEDEARFYVGQTVLAIESIHKHNYIHRDIKPDNLLLDRYGHMKLSDFGLCKPLDCTNLPILHENDFTAGKTLKDVLDMDGRLNTSTTPKRTQQEQLSHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGKECDWWSLGAIMYEMLIGYPPFYSEEPMSTCRKIVNWRTHLKFPEEAKLSAEAKDLISKLLCNVEQRLGTKGAHEIKAHPWFKDVQWDKLYQMEAAFLPEVNSELDTQNFEKFEEAGPQMQSSSRSGPWRKMLSSKDVNFVGYTYKNFEIVNDHQVPGVAELKKKSKPKRPSIKTLFDSTAVGSQPYQGSFMNMLPTQIETSESPEPSPPGSMSSPTRLCSFQQQPLRPR*

Protein Length: 627

Fln nts: GTGAAATTTCACCCTTCGCTGGTTGGATCGTTGACCGGACTATCTCGTGTGTATATCCATAGCGGGACCGGTTGAAATGCCGCGGGAAGCTGGACAACTGGCAGTCATCTGTAGAGTGAACGATTGATTTCCGAGAGGAGAGGCAGAGGTGTATTTACCGGCGAGCAAGATCTAAAGAAAAAACAAGAACAAAAGTTACGGTGCGGACCTCACGGTTCTATACATGTCGCTTTACCTGCAATTATTTTGTTTTCGCCCTGGCAGACATTTGGGTTAAACCCCAACATCTGTGGACGGATAGATTGTCGCCGTTGATCTTGATCAGCCGTGAAGGCCTCTCGAGATACGCCGGCGTTAATGTCGAGGTCATGGTATAGAGAAACATTACATAGATTTGGATTGTATTTGCACAGCGCCAAGGTCTCCAAGAAAATTATAGGTTAGATGGAATGGAATGTGGTTATGGAAATTAGAATGACAGCGTACAGAGCGTAATTTGGTCGGCAATGACGGCGGATCGAGGCAGTGCTGGGTTTTGCGAGGCGATTGGCTTTTTCTGGTGCTTTTTTGGATGAAGTTGGCAGGTTTCCGTGCTTAATTCGAGGCGTAGAGGGTTTTGGGGGCTGAAACTGCTGTGAA_-_ATGAAGGGTTTGCGTGATATTCTGTCCAGGCCTGTGGTTTGGAGTAGCTGTGCAGGCGCGCGTGGTGATCAGCCGGAAATTAGCCTTGTTATTGATATAGGATGCCGTTTTTTTAATTTAAAAGTTAGGCGTTTAGTTTTATACATATATACAGAAATGGAAGCCACGAGAAGCTGGTTTCAGCGGTTTCAACCGAAATCAGACAGGCATAAAGCGGCGATGGGGAAAAAGAAGGAAGGGGAAAAGGGTAAAGATGGCCCCAGACCAGCTCACGACGAAGCTCCCTCAAACATCACTAAACAGAAAGTAGCTGCCGCCAAGCAATACATAGAGAACCACTACAAAGCTCAAATGAAGAATTTGCAGGAGCGCAAAGAGAGAAGATGGATTTTGGAACGTAAACTGGCAGATGCAGAAGTGTCTGAAGAGGAACAAAATAATCTCCTGAAATATCTGGAGAGAAAGGAGACAGAGTACATGCGTCTTCAACGGCATAAAATGGGTGTTGATGATTTTGAAATGTTGACTATTATTGGAAGGGGTGCTTTTGGGGAGGTGAGGTTGTGCAGAGAGAAGACAACAGGTAATGTCTATGCAATGAAAAAGTTGAAGAAGGCGGAGATGCTTCGTCGAGGCCAGGTGGAGCATGTGAAGGCAGAAAGGAATCTTCTTGCCGAGGTAGACAGTAATTGCATAGTTAAACTCTATTGCTCCTTCCAAGATGATGAGCATCTCTATCTTATAATGGAGTATTTACCTGGAGGAGATATGATGACACTGCTGATGCGGAAGGATACTTTGAAGGAGGATGAGGCAAGGTTTTATGTTGGACAGACGGTTTTGGCAATTGAGTCAATTCACAAGCACAATTACATTCACAGGGACATCAAACCAGATAATTTATTACTTGATAGATATGGACACATGAAGCTTTCAGATTTTGGTTTATGTAAACCATTGGACTGCACTAATCTACCCATTCTCCATGAAAATGACTTCACCGCTGGAAAAACTCTAAAAGATGTTTTGGATATGGATGGGCGTTTGAACACATCAACCACACCAAAGCGCACTCAACAGGAGCAGCTTTCACATTGGCAAAGGAACAGGCGCATGCTGGCTTATTCAACTGTTGGTACACCAGACTACATTGCCCCTGAAGTATTATTGAAGAAAGGCTATGGAAAGGAGTGCGATTGGTGGTCACTTGGAGCGATTATGTATGAAATGCTTATAGGTTATCCACCTTTTTATTCTGAAGAGCCAATGTCAACTTGTAGGAAGATAGTGAACTGGAGAACTCACCTTAAATTTCCAGAAGAAGCAAAGTTGTCAGCAGAGGCCAAAGATCTTATCAGTAAACTTCTTTGTAATGTAGAGCAGAGGCTTGGAACAAAAGGTGCCCATGAAATAAAGGCACATCCATGGTTTAAAGATGTTCAATGGGACAAATTATATCAGATGGAAGCAGCATTTTTGCCAGAGGTCAATAGTGAACTGGATACTCAGAATTTTGAGAAATTTGAAGAGGCTGGACCCCAAATGCAGTCTTCTTCAAGGTCAGGTCCATGGAGAAAGATGCTTTCGTCAAAGGATGTAAATTTTGTAGGTTATACCTACAAGAATTTTGAAATTGTCAATGATCATCAAGTACCTGGTGTTGCAGAGTTGAAGAAGAAAAGTAAACCTAAGCGGCCCTCCATCAAAACGTTATTTGACTCAACAGCTGTTGGTAGCCAACCTTACCAAGGAAGTTTTATGAATATGTTGCCAACACAAATTGAAACATCTGAGAGTCCAGAACCTTCTCCTCCAGGTAGTATGTCTTCACCAACTCGCTTGTGTTCTTTCCAGCAACAACCTTTGCGTCCAAGATGA___TTATATTCTGATCTGCTTTGTTAGTGTTGCCATGCATTGGTGACAGTATTGCAGTGTAAGTTGCATGTCCATATTTGTACTGAAGTTGGACCCTTGGGTAACCCATATGGGAACCTGTGGGCCAACTTTGTGCCATAATGTTGATATTATTAGTTTTTTTGATTAAGTTTCCTGATTTCTTAGAAGACCAAAATCTTGCAATAAATGTGCCTGCCTTTAGTCACAAGAGGCAGTCTTACTGGATTTTTATTGTTGCTTGTGGTTGTCATGCCAATGAGCGAGACTTGAATTCAGGATCACTCAAGTGATTGCTAGGGTTGTGGTATAAGCAATGAGCATACATTGCTATAATCAGTTTTCAAATCGTCTCCTTTTCTATGAATGGGGAGTTCTGTATATCAGTCTAAACTACTTAAGAAATTCTTTCAAGGTGTGTCATATATGTTTGCAAGGGGTCATATGCATATCTATGCTTTATTCGTTCAGACTTCGTCCTAGATTAGTTGCCTTGTTGGCATTGGAAATATATTCAACTCTTCACTGCCATTATGATTATGTTTCATGTACCAATCATGTTGTAGCGTTAGATAGATAAAACCAACATCTATTCTTCAAATATAGTGATTATTTTGGACAATGACCAAGGAAGAAAAGCAACACATTTGTCCTTAATAGATTGAGCCATTGCATCTGGTGGCTAAAATTTTTTTCAAAGTTT

Fln Alignment:

Contig32466___MEAAFLPEVNSELDTQNFEKFEEAGPQMQSSSRSGPWRKMLSSKDVNFVGYTYKNFEIVNDHQVPGVAELXXXXXXXXXXXXTLFDSTAVGSQPYQGSFMNMLXXXXXXXXXXXXXXXXXXXXXXRLCSFQQQPLRPR
C0PTP9_______________MEAAFLPEVNSELDTQNFEKFEEAGPQMQSSSRSGPWRKMLSSKDVNFVGYTYKNFEIVNDHPVPGVAELKKKTKPKRPSIKTLFDATAVGSQPYQGSFMNLLPTQIETSESPEPSPPGSMSSPTRLCSFQQQPLHPR

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
405	90			10	0.90298
423		8		91	0.999766
426		91		8	0.999766
890		14		85	0.999981
1075	88			11	0.923564
1301	50		50		1.0
1333	10		90		0.90298
1413	90		10		0.90298
1454			90	10	0.90298
1636	88		11		0.923564
1856	22		77		0.999999
1863	10			90	0.90298
2400	90			10	0.90298
2436	88		11		0.923564
2484		11		88	0.923564
2485	11		88		0.923564
2522	12	87			0.992554
2814		8	92		0.999718
2815	92		8		0.999718
2819		92	8		0.999718
2821		92	8		0.999718
2823	92	8			0.999718
2824			92	8	0.999718
2827	92		8		0.999718
2828		8		92	0.999718
2831		91		8	0.999766
2832		8		91	0.999766
2834		8	91		0.999766
2835			91	8	0.999766
2836		8	91		0.999766
2837	8			91	0.999766
2869	90	6			0.997073
3070	10			90	0.90298
3071	10		90		0.90298
3102		66		33	1.0
3125	14	14			0.984337
3126		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain