SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32242

Length: 2744 nt

UniGene Fasta

>sp_v3.0_unigene32242
TGGACGTAGAGACCACTGATTTTATGTTGGGAGTTCGCCACGCGAAAGCCACATAACTCTGCCCGCCATGATTGCAATTGCAAACGCTCAGCAGATTTCATATACAAAAGCATGGAGCGACGCTAAGTGCACCAAACCCTTCGCAGTAAATCAATCCTCGTGTCAAGGCTGAAGTACAAAGAAGAAAAAAACCTCACAAGAATGACGCGCGGGGACGAGAACGAAGATATGGAGACTCGACCGGTGTTCGGATCTTCTTCAGCAGTGGGAGGATCTTCTTCCAGCGGCCATTCTATCTTGCAGTTTTCGCCGCTGCAGAGTACCGTGGACGAGGGTTTCTGGAGAAAATTAGCTGACCTAAAGCTCGAGGTCCTCGGCATCTCTGAAAATCCGCTCGACATCACAGGGTTCTATGCTCCAATGTTTCATGAACAGGTGTCAAATCATCTGAAATTGCTTTCTGAATCACTACAGCCTGATACTGGTAGGGAAACATCGGTCTCGATCAAATTTTCAGGGAACAGAAACCTATGTGCTGTTCCAGGAATACTACACAATATGAATACACTGGACTCTTTCAAGGCTCTTGACAGGCGTGCTCTGTTTAACTTGGAAGTGCAGAAGATCTGGGAGGATATTCATTCTGGAAAAGTGGAGGAGGACAGCAGCTTGCTTTGTAGATTTTTGCTAATTTCATATGCGGATTTAAAAAAATGGAACTTCTATTATTGGTTTGCATTTCCTGCATTGGTTCTTGAACCTCCTGCAATGTTGACTGATCTGCGAAGAGCATCAGAAGTTTTCAGCATAGAAGAGGGCAAAGCCTTATTAACAGCTTGTAATGAATGGCGCCAGTCAACATCAACTGCAGGTGTTCCTTTCTTTTTGGTTCACATAATCTCTAATGTTGTTGTTAGACTAAGGCCATTAAGAGACTGGGAAGCATGCCAACAAGAAGGTGGGAAGGTGCTTCTTGGTTTTTATGACCCATGCCATCTTCCAACCAATCCTGGTTGGCCACTTCGCAACTTTCTTGCATTTGCTGTGGTGAGGTGGGGCCTAGAAAGGGCCACAGTTCTATGCTACAGAGAGAAAGGAGGGTTTGGAGATTTGCAGCAATGTCTTGTTGCTGATATCTTGGTGTCTACTCCACCAGGTTGGAGTAATCGTGAACTCGTTCCTAAGGCAGTTGGATGGGAACTGAATAGCCATGGCAAGATGGGACCTAGATTGATTAATCTTGCAACTGAGATGGATCCCAAGAGGTTGGCTATATCAGCAGCAGATCTAAATTTGAAACTTATGAGATGGCGTGCTCTACCATCTCTAGACTTGAAATGCTTATCATCCACAAAATGCCTTCTTCTTGGAGCTGGTACACTTGGTTGTCAGGTCGCTCGTAATCTTATGGCTTGGGGCGTTAGACATATCACACTAGTTGACCGTGGTCATGTGGCTATGTCGAATCCTCTGCGTCAGTCTTTATATACTCATGATGACTGCTTGAATGGAGGTCAACTAAAAGTCAATGCAGCAGCAGAGAATTTGAAGTGCATTTTTCCTGGTGTGGAGGCAGAGGGTGTTTCCATGACCATTCCAATGCCTGGACATTTTGTGACAGCAGATGAACTATCGAATATTAGGAAGGACTGTATGCAGCTTAAAGATTTGATTGACAGCCATGATGTCATTTTCTTGCTGACGGATACAAGAGAAAGTCGTTGGCTTCCAACACTTCTATGTGCTGATGCTAACAAGGTAGCAATCACAGCTGCTTTAGGATTTGATACCTTCCTTGTGATGCGACATGGTGCTGGTGTAACCTTATCAATTGATACCGACACTCCGAAAATGTTGGGACAGGATGGCCCTTCAGAATTTGAGGATCTGGCAGCTTCTGCATCAGAACGCAGAGAACAAAGATTAGGCTGCTATTTTTGCAGTGATGTTGTTGCTCCAGTGGATTCAACCCGGAACCTAACACTGGACCAACAGTGCACCGTAACACGTCCTGGGCTTGCTCCTATTGCCGCAGCTCTTGCAGTGGAGCTTACAGTGTCCATTCTTCACCATCCTTTTCGGATTAATGCTCCAGCAGATGAGGCAGGTTCTGATGATTCTAGTGTTGAACAACCTCTTGGTATTTTGCCCCATCAAATCCGTGGGGATATTGCTCACTTTTCGCAAATGTTAATTAAAGGTTATGCATCTAAAAGATGTATAGCCTGCGCTGAAACGATTGTGTCAGAATACCGTGCCAGAGGAATCGACTTTGTATTGGAGGCTATAAATCAACCAACTTATCTGGAAGATCTTACAGGACTTACAGAATTAATGAATCTTGCGAAGCATTTCAACTTAGATTGGGAGGATTGAAATCAAGTGAATGATGATGTGGAGATCTAGATCTCAATTACTTGACCATGAAATAACCACGTTTATTTTGCAGCATTCATCGCAAGACTGCTTATCTTCTTCTCCATTTATCATAAAATCAGTACATTGCTGAATCACTGAAGGCATAGAAAACAAGCTGTTCCATGGAAGGAGTAATGTGAAACTAGAAGATATAAATGAAAAGTATTTACAACAACAGTTCTATCGATTGGTACTAGTGTTAGATGAATGGATATAGCTTTGCTTTTTTCAGAGTACCATACATGTTTGAGTTGATGAGTAGATTGACAAATTTTTTTAGTGGTTGGAAAGTATGTATATTTGCATTATTTGAAGGAGGCAACATT

Ace file of the UniGene sp_v3.0_unigene32242

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-like modifier-activating enzyme atg7 [Arabidopsis thaliana] sp\|Q94CD5.1\|ATG7_ARATH RecName: Full=Ubiquitin-like modifier-activating enzyme atg7; AltName: Full=ATG12-activating enzyme E1 atg7; AltName: Full=Autophagy-related protein 7; Short=AtAP	-	-	0.0	57%
FL-Next	sp=Ubiquitin-like modifier-activating enzyme atg7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%

Source	Gene names
Sma3	APG7; ATG7; At5g45900; Atg7; CHLREDRAFT_114160; GSVIVT00035887001; K15I22.10; MICPUCDRAFT_45687; MICPUN_107394; OSTLU_49932; Os01g0614900; OsI_02850; OsI_02857; OsJ_02603; Ot06g03480; P0410E01.41-1; P0410E01.41-2; PHATRDRAFT_9342; PHYPADRAFT_128960; POPTR

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	E1-like protein-activating enzyme Gsa7p/Apg7p	IPR006285	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G45900.1	APG7, ATAPG7, ATG7, ATATG7 ThiF family protein chr5:18615304-18618436 FORWARD LENGTH=697	59%
RefSeq	Arabidopsis thaliana	NP_568652.1	ubiquitin-like modifier-activating enzyme atg7 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002305077.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q94CD5

Fln msg:

Fln protein: MTRGDENEDMETRPVFGSSSAVGGSSSSGHSILQFSPLQSTVDEGFWRKLADLKLEVLGISENPLDITGFYAPMFHEQVSNHLKLLSESLQPDTGRETSVSIKFSGNRNLCAVPGILHNMNTLDSFKALDRRALFNLEVQKIWEDIHSGKVEEDSSLLCRFLLISYADLKKWNFYYWFAFPALVLEPPAMLTDLRRASEVFSIEEGKALLTACNEWRQSTSTAGVPFFLVHIISNVVVRLRPLRDWEACQQEGGKVLLGFYDPCHLPTNPGWPLRNFLAFAVVRWGLERATVLCYREKGGFGDLQQCLVADILVSTPPGWSNRELVPKAVGWELNSHGKMGPRLINLATEMDPKRLAISAADLNLKLMRWRALPSLDLKCLSSTKCLLLGAGTLGCQVARNLMAWGVRHITLVDRGHVAMSNPLRQSLYTHDDCLNGGQLKVNAAAENLKCIFPGVEAEGVSMTIPMPGHFVTADELSNIRKDCMQLKDLIDSHDVIFLLTDTRESRWLPTLLCADANKVAITAALGFDTFLVMRHGAGVTLSIDTDTPKMLGQDGPSEFEDLAASASERREQRLGCYFCSDVVAPVDSTRNLTLDQQCTVTRPGLAPIAAALAVELTVSILHHPFRINAPADEAGSDDSSVEQPLGILPHQIRGDIAHFSQMLIKGYASKRCIACAETIVSEYRARGIDFVLEAINQPTYLEDLTGLTELMNLAKHFNLDWED*

Protein Length: 726

Fln nts: TGGACGTAGAGACCACTGATTTTATGTTGGGAGTTCGCCACGCGAAAGCCACATAACTCTGCCCGCCATGATTGCAATTGCAAACGCTCAGCAGATTTCATATACAAAAGCATGGAGCGACGCTAAGTGCACCAAACCCTTCGCAGTAAATCAATCCTCGTGTCAAGGCTGAAGTACAAAGAAGAAAAAAACCTCACAAGA_-_ATGACGCGCGGGGACGAGAACGAAGATATGGAGACTCGACCGGTGTTCGGATCTTCTTCAGCAGTGGGAGGATCTTCTTCCAGCGGCCATTCTATCTTGCAGTTTTCGCCGCTGCAGAGTACCGTGGACGAGGGTTTCTGGAGAAAATTAGCTGACCTAAAGCTCGAGGTCCTCGGCATCTCTGAAAATCCGCTCGACATCACAGGGTTCTATGCTCCAATGTTTCATGAACAGGTGTCAAATCATCTGAAATTGCTTTCTGAATCACTACAGCCTGATACTGGTAGGGAAACATCGGTCTCGATCAAATTTTCAGGGAACAGAAACCTATGTGCTGTTCCAGGAATACTACACAATATGAATACACTGGACTCTTTCAAGGCTCTTGACAGGCGTGCTCTGTTTAACTTGGAAGTGCAGAAGATCTGGGAGGATATTCATTCTGGAAAAGTGGAGGAGGACAGCAGCTTGCTTTGTAGATTTTTGCTAATTTCATATGCGGATTTAAAAAAATGGAACTTCTATTATTGGTTTGCATTTCCTGCATTGGTTCTTGAACCTCCTGCAATGTTGACTGATCTGCGAAGAGCATCAGAAGTTTTCAGCATAGAAGAGGGCAAAGCCTTATTAACAGCTTGTAATGAATGGCGCCAGTCAACATCAACTGCAGGTGTTCCTTTCTTTTTGGTTCACATAATCTCTAATGTTGTTGTTAGACTAAGGCCATTAAGAGACTGGGAAGCATGCCAACAAGAAGGTGGGAAGGTGCTTCTTGGTTTTTATGACCCATGCCATCTTCCAACCAATCCTGGTTGGCCACTTCGCAACTTTCTTGCATTTGCTGTGGTGAGGTGGGGCCTAGAAAGGGCCACAGTTCTATGCTACAGAGAGAAAGGAGGGTTTGGAGATTTGCAGCAATGTCTTGTTGCTGATATCTTGGTGTCTACTCCACCAGGTTGGAGTAATCGTGAACTCGTTCCTAAGGCAGTTGGATGGGAACTGAATAGCCATGGCAAGATGGGACCTAGATTGATTAATCTTGCAACTGAGATGGATCCCAAGAGGTTGGCTATATCAGCAGCAGATCTAAATTTGAAACTTATGAGATGGCGTGCTCTACCATCTCTAGACTTGAAATGCTTATCATCCACAAAATGCCTTCTTCTTGGAGCTGGTACACTTGGTTGTCAGGTCGCTCGTAATCTTATGGCTTGGGGCGTTAGACATATCACACTAGTTGACCGTGGTCATGTGGCTATGTCGAATCCTCTGCGTCAGTCTTTATATACTCATGATGACTGCTTGAATGGAGGTCAACTAAAAGTCAATGCAGCAGCAGAGAATTTGAAGTGCATTTTTCCTGGTGTGGAGGCAGAGGGTGTTTCCATGACCATTCCAATGCCTGGACATTTTGTGACAGCAGATGAACTATCGAATATTAGGAAGGACTGTATGCAGCTTAAAGATTTGATTGACAGCCATGATGTCATTTTCTTGCTGACGGATACAAGAGAAAGTCGTTGGCTTCCAACACTTCTATGTGCTGATGCTAACAAGGTAGCAATCACAGCTGCTTTAGGATTTGATACCTTCCTTGTGATGCGACATGGTGCTGGTGTAACCTTATCAATTGATACCGACACTCCGAAAATGTTGGGACAGGATGGCCCTTCAGAATTTGAGGATCTGGCAGCTTCTGCATCAGAACGCAGAGAACAAAGATTAGGCTGCTATTTTTGCAGTGATGTTGTTGCTCCAGTGGATTCAACCCGGAACCTAACACTGGACCAACAGTGCACCGTAACACGTCCTGGGCTTGCTCCTATTGCCGCAGCTCTTGCAGTGGAGCTTACAGTGTCCATTCTTCACCATCCTTTTCGGATTAATGCTCCAGCAGATGAGGCAGGTTCTGATGATTCTAGTGTTGAACAACCTCTTGGTATTTTGCCCCATCAAATCCGTGGGGATATTGCTCACTTTTCGCAAATGTTAATTAAAGGTTATGCATCTAAAAGATGTATAGCCTGCGCTGAAACGATTGTGTCAGAATACCGTGCCAGAGGAATCGACTTTGTATTGGAGGCTATAAATCAACCAACTTATCTGGAAGATCTTACAGGACTTACAGAATTAATGAATCTTGCGAAGCATTTCAACTTAGATTGGGAGGATTGA___AATCAAGTGAATGATGATGTGGAGATCTAGATCTCAATTACTTGACCATGAAATAACCACGTTTATTTTGCAGCATTCATCGCAAGACTGCTTATCTTCTTCTCCATTTATCATAAAATCAGTACATTGCTGAATCACTGAAGGCATAGAAAACAAGCTGTTCCATGGAAGGAGTAATGTGAAACTAGAAGATATAAATGAAAAGTATTTACAACAACAGTTCTATCGATTGGTACTAGTGTTAGATGAATGGATATAGCTTTGCTTTTTTCAGAGTACCATACATGTTTGAGTTGATGAGTAGATTGACAAATTTTTTTAGTGGTTGGAAAGTATGTATATTTGCATTATTTGAAGGAGGCAACATT

Fln Alignment:

Contig32242___ILQFSPLQSTVDEGFWRKLADLKLEVLGISENPLDITGFYAPMFHEQVSNHLKLLSESLQPDTGRETSVSIKFSGNRNLCAVPGILHNMNTLDSFKALDRRALFNLEVQKIWEDIHSGKVEEDSSLLCRFLLISYADLKKWNFYYWFAFPALVLEPPAMLTDLRRASEVFSIEEGKALLTACNEWRQSTSTAGVPFFLVHIISNVVVRLRPLRDWEACQQEGGKVLLGFYDPCHLPTNPGWPLRNFLAFAVVRWGLERATVLCYREKGGFGDLQQCLVADILVSTPPGWSNRELVPKAVGWELNSHGKMGPRLINLATEMDPKRLAISAADLNLKLMRWRALPXXXXXXXXXXXXXXXGAGTLGCQVARNLMAWGVRHITLVDRGHVAMSNPLRQSLYTHDDCLNGGQLKVNAAAENLKCIFPGVEAEGVSMTIPMPGHFVTADELSNIRKDCMQLKDLIDSHDVIFLLTDTRESRWLPTLLCADANKVAITAALGFDTFLVMRHGAGVTLSIDTDTPKMLGQDGPSEFEDLAASASERREQRLGCYFCSDVVAPVDSTRNLTLDQQCTVTRPGLAPIAAALAVELTVSILHHPFRINAPADEA-----GSDDSSVEQPLGILPHQIRGDIAHFSQMLIKGYASKRCIACAETIVSEYRARGIDFVLEAINQPTYLEDLTGLTELMNLAKHFNLDWED*NQVNDDVEI
Q94CD5_______________ILQFAPLNSSVDEGFWHSFSSLKLDKLGIDDSPISITGFYGPCGHPQVSNHLTLLSESLPLD--EQSLIASTSHGNRNKCPVPGILYNTNTVESFNKLDKQSLLKAEANKIWEDIQSGKALEDPSVLPRFLVISFADLKKWSFRYWFAFPAFVLDPPVSLIELKPASEYFSSEEAESVSAACNDWRDSDLTTDVPFFLVSVSSDSKASIRHLKDLEACQGDHQKLLFGFYDPCHLPSNPGWPLRNYLALIRSRWNLETVWFFCYRESRGFADLNLSLVGQASITLSSGES-AETVPNSVGWELNK-GKRVPRSISLANSMDPTRLAVSAVDLNLKLMRWRALPSLNLNVLSSVKCLLLGAGTLGCQVARTLMGWGIRNITFVDYGKVAMSNPVRQSLYNFEDCLGRGEFKAVAAVKSLKQIFPAMETSGVVMAIPMPGHPISSQEEDSVLGDCKRLSELIESHDAVFLLTDTRESRWLPSLLCANANKIAINAALGFDSYMVMRHGAGPT-SLSDDMQNL--------------DINKTNTQRLGCYFCNDVVAPQDSMTDRTLDQQCTVTRPGLAPIAGALAVELLVGVLQHPLGINAKGDNSSLSNTGNNDDS---PLGILPHQIRGSVSQFSQITLLGQASNSCTACSETVISEYRERGNSFILEAINHPTYLEDLTGLTELKKAANSFNLDWEDDDTDDDDVAV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2078		25		75	1.0
2588	55			44	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain