SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32211

Length: 1082 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32211

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AT-hook DNA-binding protein n=1 Tax=Catharanthus roseus RepID=A1DR80_CATRO	-	-	0.0	64%
FL-Next	tr=AT-hook DNA-binding protein; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea).	-	-	0.0	70%
Sma3	DNA-binding protein-like	-	-	1.414e-19	-

Source	Gene names
Sma3	23.t00073; 40.t00056; 46C02.8; AHL15; AHL16; AHL17; AHL18; AHL19; AHL20; AHL21; AHL22; AHL23; AHL24; AHL25; AHL26; AHL27; AHL28; AHL29; AT4g12050; AT4g17800; AT4g22810; AT4g35390; At1g14490; At1g20900; At1g76500; At2g35270; At2g42940; At2g45430; At3g04570

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	double-stranded DNA binding	GO:0003690	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	chromatin organization	GO:0006325	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	negative regulation of gibberellic acid mediated signaling pathway	GO:0009938	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Predicted AT-hook DNA-binding	IPR014476	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22810.1	Predicted AT-hook DNA-binding family protein chr4:11984432-11985406 FORWARD LENGTH=324	65%
RefSeq	Arabidopsis thaliana	NP_194012.1	putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002299584.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A1DR80

Fln msg: atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 268 - 293

Fln protein: MATADQGGAQSLDDSNAGAGINGSRDRKINNSEAEEGRGDHGALIRRPRGRPAGSKNKPKPPIIITRDSANALRAQALEIGSGCDVNESVANYARRRQRGVCILSGTGTVTNVTLRQPAAPNAVVTLHGRFEILSLSGSFLPPPAPHTGLTIYLSSGQGQVVGGNVVGPLIASGPVIIMAASFLNAAYDRLPLEDEEPQAQPLQITQPPSQQQQNQQNQSSAPMTAHPISEHAANINMPLFNLPPNLLSNGLPPDAYPAWHPGRPPY*

Protein Length: 269

Fln nts: GGCTCAGACCGGGGGAGTAATTGACATCGATGCGTCC_-_ATGGCTACAGCGGATCAAGGCGGCGCTCAATCTCTGGATGACAGTAATGCAGGAGCTGGCATCAATGGCTCCCGTGACAGAAAAATTAACAACAGTGAGGCCGAAGAAGGGCGCGGGGATCACGGAGCCCTGATACGGCGACCCAGGGGCAGGCCCGCGGGATCGAAAAATAAGCCGAAGCCGCCGATTATCATCACCCGCGACAGCGCCAACGCGCTGCGCGCCCAGGCGCTGGAGATCGGCAGCGGGTGCGATGTGAACGAGAGCGTTGCCAATTACGCCCGCAGGAGGCAACGCGGGGTCTGCATTCTCAGCGGTACCGGTACTGTCACTAACGTCACGCTACGGCAACCGGCGGCCCCTAACGCGGTCGTTACTCTGCACGGACGCTTCGAGATCTTGTCACTCTCAGGTTCCTTCCTGCCCCCGCCCGCGCCCCACACCGGGCTCACCATCTATCTCTCCAGCGGTCAGGGTCAGGTCGTCGGCGGCAACGTGGTCGGGCCACTCATCGCCTCCGGACCCGTCATTATCATGGCCGCCTCGTTCCTCAATGCCGCCTACGATCGGCTCCCGCTGGAGGACGAAGAACCCCAGGCGCAACCTCTGCAAATAACGCAGCCGCCTTCTCAGCAGCAGCAGAATCAGCAAAATCAGTCCTCGGCTCCCATGACTGCGCACCCCATCTCCGAACACGCCGCCAACATCAACATGCCGCTCTTCAACCTTCCTCCTAATCTTCTCTCCAACGGATTGCCGCCCGATGCCTACCCGGCTTGGCACCCCGGCCGCCCTCCTTATTGA___TATTCAAACTTTGTTTGTTTCTCCTCTAGGGTATCTTGAAATTGCTTCTGCTTCTGCGATCGTCAAATCTGCGGCTTTTGCCCTTTTGTACTAATCACATTTAACTGCAGTGGTTACCTCTGCAACGAGGTGAGCGCATTTAATTTCTATTATTTCGATGCAGTAGGACGCATATATATATGAACCTCACAGCCACTAAGTCAGTAGCTTGTTTCAGAAATTAGCGAATGAAAATTATTAC

Fln Alignment:

Contig32211___SLDDSNAGAGINGSRDRKINNSEAEEGRGDHGA--LIRRPRGRPAGSKNKPKPPIIITRDSANALRAQALEIGSGCDVNESVANYARRRQRGVCILSGTGTVTNVTLRQPAAPNAVVTLHGRFEILSLSGSFLPPPAP--HTGLTIYLSSXXXXXXXXXXXXPLIASGPVIIMAASFLNAAYDRLPLEDEEPQAQPLQ
A1DR80_______________SEDEQSGTSGLKRDRDEKNDSGDGKDGGGDPGSGEMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIADGCDIMESVATFARRRQRGVCIMSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGALLASGPVVIMAASFSNAAYERLPL-DEEENSIPLQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1014	44	55			1.0
1044		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
668	679	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain