SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32206

Length: 977 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32206

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Properoxidase n=1 Tax=Picea abies RepID=Q0JW34_PICAB	-	-	87%
FL-Next	tr=Properoxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	90%
Sma3	Properoxidase	-	-	-

Source	Gene names
Sma3	px18;

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05340.1	Peroxidase superfamily protein chr5:1579142-1580819 REVERSE LENGTH=324	62%
RefSeq	Arabidopsis thaliana	NP_196153.1	peroxidase 52 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002328991.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q0JW34

Fln msg: Overlapping hits, possible frame ERROR between 893 and 878, STOP codon was not found. Distance to subject end: 3 aas,

Fln protein: MASLMKSFACIAVMVFIVCSITCRVNGQLSSTFYDKSCPTALSVVKAAVKQAVANEKRMGASLLRLHFHDCFVNGCDGSVLLDDSSTITGEKTANPNANSARGFDVIDTIKSNVEKACSGVVSCADILAIAARDSVVELGGPSWIVMLGRRDSTTASKSGANSNIPPPTSSLSNLISLFQAQGLSAKEMVALAGGHTIGQAQCKNFRAHIYNDTNIDSAYATSLRSKCPSTTGSGDSNLSPLDYMTPTVFDKNYYSDLKSQKGLLHSDQELFNGGSTDSQVTTYASNxxxxxxxDFAAAMVKMGNIKPLTGNSGQIRKNCR

Protein Length: 322

Fln nts: CCATAAGCAAAAAA_-_ATGGCTTCCTTGATGAAGAGCTTCGCGTGTATTGCTGTAATGGTGTTTATTGTGTGTTCTATTACTTGTAGAGTGAATGGGCAGCTGAGCTCCACGTTTTACGACAAATCTTGCCCGACGGCACTGTCGGTGGTGAAGGCCGCGGTGAAGCAAGCGGTCGCTAACGAGAAACGGATGGGTGCGTCTTTGCTCCGCCTGCACTTTCACGACTGCTTCGTTAATGGTTGCGATGGGTCCGTTCTGTTGGACGATTCTTCGACCATTACTGGCGAGAAGACAGCTAATCCCAATGCCAATTCTGCGAGGGGATTCGACGTAATAGATACCATAAAGAGCAATGTCGAGAAAGCTTGCAGCGGAGTCGTTTCCTGTGCAGACATTCTCGCCATTGCTGCTCGTGATTCTGTTGTTGAACTGGGCGGTCCTTCATGGATAGTAATGTTGGGAAGGCGAGACTCGACAACAGCTAGCAAAAGCGGTGCAAACAGTAATATTCCGCCTCCCACTTCCAGTCTAAGCAACCTCATCTCACTATTCCAAGCGCAGGGACTCTCCGCAAAGGAAATGGTTGCACTTGCAGGTGGTCATACCATCGGGCAGGCACAATGCAAGAATTTCAGAGCCCATATTTACAACGACACCAACATAGACAGTGCGTACGCCACTTCATTGCGTTCAAAGTGTCCGAGTACCACAGGCTCGGGAGACAGCAACCTGTCGCCATTGGATTATATGACTCCCACTGTGTTTGACAAAAATTATTACAGCGACCTGAAAAGCCAAAAAGGACTTCTCCACTCCGACCAGGAACTCTTCAACGGAGGCTCCACTGATTCACAGGTGACTACGTACGCCTCAAACxxxxxxxxxxxxxxxxxxxxxGATTTTGCTGCGGCCATGGTTAAGATGGGAAATATCAAACCCCTTACTGGCAACAGCGGACAGATCCGAAAGAACTGCAGGA

Fln Alignment:

Contig32206___MVFIVCSITCRVNGQLSSTFYDKSCPTALSXXXXXXXXXXXNEKRMGASLLRLHFHDCFVNGCDGSVLLDDSSTITGEKTANPNANSARGFDVIDTIKSNVEKACSGVVSCADILAIAARDSVVELGGPSWIVMLGRRDSTTASKSGANSNIPPPTSSLSNLISLFQAQGLSAKEMVALAGGHTIGQAQCKNFRAHIYNDTNIDSAYATSLRSKCPSTTGSGDSNLSPLDYMTPTVFDKNYYSDLKSQKGLLHSDQELFNGGSTDSQVTTYASNxxxxxxDFAAAMVKMGNIKPLTGNSGQIRKNCR
Q0JW34_______________MVFIVCSITHTANGQLSSTFYAQSCPTALSVVKAAVRQAVANEKRMGASLLRLHFHDCFVNGCDGSVLLDDSSTITGEKTANPNANSARGFDVIDTIKSNVEKACSGVVSCADILAISARDSVVELGGPSWTVMLGRRDSTTASKNGANNNIPPPTSSLSNLISLFQAQGLSTKEMVALSGGHTIGQARCVNFRAHIYNETNIDSTYSTSLQSKCPSTAGSGDSNLSPLDYVTPTAFDKNYYSNLKSKKGLLHSDQELFNGGSTDSQVTTYASNxxxxxxDFAAAMVKMGNIKPLTGTSGQIRKNCR

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
404		25		75	0.996473
413		20		80	0.995493
431		25	75		0.996473
437			25	75	0.996473
441	25			75	0.996473
448		25		75	0.996473
449	75		25		0.996473
461	75		25		0.996473
473	25		75		0.996473
482		25		75	0.996473
502	20		60		0.99255
504	80		20		0.995493
505	80		20		0.995493
506		20	20	60	0.99255
512		20	80		0.995493
530	80		20		0.995493
536	25	75			0.996473
570	33		66		0.997452
578	66		33		0.997452
592			33	33	0.997753
594	33			66	0.997452
606		66		33	0.997452
618	66		33		0.997452
654		66		33	0.997452
657	33	66			0.997452
658	66			33	0.997452
659	66			33	0.997452
767	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain