SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32196

Length: 1102 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32196

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Arginine/serine-rich splicing factor RSP41	-	-	1.765e-16	-

Source	Gene names
Sma3	AT2G46610; AT4G25500; AT4g25500; AT5G52040; At2g46610; At3g61860; At4g25500; At5g52040; F21F14.30; GSVIVT00008658001; GSVIVT00026247001; H0716A07.4; M7J2.130; OSJNBa0020P07.8; Os02g0122800; Os04g0118900; OsI_05650; OsI_14641; OsJ_05182; OsJ_13581; P0575F1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	spliceosomal complex	GO:0005681	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52040.2	ATRSP41, RS41, At-RS41 RNA-binding (RRM/RBD/RNP motifs) family protein chr5:21131081-21133318 FORWARD LENGTH=357	56%
RefSeq	Arabidopsis thaliana	NP_851174.1	arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002322436.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTP2

Fln msg:

Fln protein: MKPLYCGNIEYEARQTDIERLFGRYGRIDRVDMKSGYAFIYMEDERDAEDAIRGLDNTEFGRQRRRLTVEWTKHADRGLRRSEDGRRSLTGLKPTKTLFVINFDPHNTRIRDLENHFQPYGKVVNVRIRRNFAFVHFESQEEATKAFDSTHMSKLLDRVITVEYAQREDGNRRGGRSSPIRGGGRYGRYGEDRGRDRSASPIYGRRAMRGSPDYGRAPSPIYSRRPERRSPDYGRAPSPIYARRSERRSPDYARDASPVDGRRHQKDSPDYGRDASPNHIRERSRSPVRRSGPSII*

Protein Length: 298

Fln nts: CCTGTTCTTGCGACTCTTACAGCCGAGCTATATCTTTTCTGGAACCCTTTTTAAATACACGGGTAGTTAGTGAAGAAGAGTTGGAGTTAGCG_-_ATGAAGCCGTTGTATTGTGGAAACATAGAGTATGAGGCTCGCCAGACAGATATTGAACGTTTGTTTGGCAGATATGGAAGAATCGACAGGGTTGACATGAAATCAGGTTATGCTTTCATCTACATGGAAGATGAACGTGATGCTGAGGATGCCATCCGAGGGCTTGACAATACTGAATTTGGCAGGCAAAGACGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGACCGTGGCCTTCGCCGGTCTGAAGATGGCAGAAGATCGCTTACAGGTTTGAAGCCAACTAAGACATTATTTGTGATAAACTTTGATCCACACAACACCAGAATCAGGGACCTTGAAAATCATTTTCAGCCCTATGGCAAAGTGGTGAATGTAAGGATTAGAAGGAATTTTGCATTTGTTCATTTTGAATCACAAGAAGAGGCGACTAAAGCTTTCGACTCCACCCATATGAGCAAATTATTAGATAGGGTGATCACAGTGGAATATGCCCAACGTGAGGATGGTAATAGAAGAGGTGGACGTTCCAGTCCCATTCGAGGAGGAGGTCGTTATGGCAGATATGGTGAGGATCGTGGCCGTGATCGATCTGCAAGTCCTATATATGGTAGACGTGCAATGAGGGGCAGTCCTGACTATGGTAGGGCTCCAAGTCCTATTTATTCAAGGCGTCCAGAGAGGCGCAGTCCTGACTACGGTAGGGCTCCAAGTCCTATCTATGCAAGGCGTTCAGAGAGGCGCAGTCCTGATTATGCCAGGGATGCAAGTCCTGTTGATGGCAGACGACATCAGAAGGATAGTCCAGATTATGGCAGAGATGCAAGCCCTAATCATATACGGGAACGCAGTCGATCACCAGTGAGGCGGTCGGGGCCTTCAATTATTTAG___AATCATTCTTGAAGTCCGTCTACCCATAGGCAGTGAAGACATGGTCCAGAAATAATCCAATGGAATATTTTGTAAACTGTATGTTGTTATTTGGCTGCTAAGGCTGATCCAGCCCTGGG

Fln Alignment:

Contig32196___MKPLYCGNIEYEARQTDIERLFGRYGRIDRVDMKSGYAFIYMEDERDAEDAIRGLDNTEFGRQRRRLTVEWTKHADRGLRRSEDGRRSLTGLKPTKTLFVINFDPHNTRIRDLENHFQPYGKVVNVRIRRNFAFVHFESQEEATKAFDSTHMSKLLDRVITVEYAQREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASPIYGRRAMRGSPDYGRAPSPIYSRRPERRSPDYGRAPSPIYARRSERRSPDYARDASPVDGRRHQKDSPDYGRDASP
A9NTP2_______________MKPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRARDLERHFEPYGKVLNVRIRRNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQRED-GNRRGGPSSPIRGGRYGRSSEDHGRDRSASPIYGRRAMRGSPDYGRAPSPTYARRPERCSPDYGRATSPIYSRRPEKHGSDYGRAASPVYASRPQKNSLDYGRDASP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain