SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32109

Length: 3020 nt

UniGene Fasta

>sp_v3.0_unigene32109
CGCAAAGGGTTTGAACCCACTGTCATAGTTAGGGTCAGATAGACCCTGGTTTGTGTCTTCCGAAAAGAGGAAGGACATGGAAGACTGAACAAGCCCCAGCCCCAGCCCAAGCCCAAGCCCATTGAGGCTTTACTGAAATGAAGCCCAGATGACTGAAATCTCATAATAATTACAATAGGAATGAAAAGGTTGATGGGCTTCATGATTGGAATCTAATATTGCAGCATGCTTCTTTGATTTCTAGTGGGAATTTCAGGTGTGTTTTGTGTGTGGCATTTTTGGAATAAGAATCATGCAATAACAGCTGAAAGCTGATGTGGGCATCTTTGAAAATAGTCCCAATGAGCCTAGAAATGTGTTTAAACTAGTGGGTTGCTGATTTCGGTAAGTGGGTATACGATTTTCTTTGTGTTTGAGCATAACACAGGCAATATACTTGATTAGTATCTGGGCAATGTATGACCTCAGAGCTTATGGATCATGCCTGCCTACTGTGAAAGGATCAAGCGGAGAAAAGATAAAATGAGGGCATTTTAATTGGGTTCAGATCGGATTGGAATTAGAGGATTTCAGTATATAGTCTGACATAACAGGAACATCAATAGATTATCACATTATCTCTTGAGCCAGGCATGGAGCCAAAGGTGGGGGAGAAATACAGACTGGGGAGAAAAATTGGCAGCGGTTCATTCGGGGAAATATACCTTGGGACCAATATTCTGACAAATGAGGAAGTTGGCATTAAACTGGAAAGTGTGAAAACTAAGCATCCTCAGCTGTTGTATGAGTCCAAAGTTTACAGAATACTCCAAGGAGGAGGAACAGAAGGTGGTATCCCAAATGTAAGATGGTTTGGTGTAGAAGGTGATTACAATGCCATGGTCCTTGATCTTCTTGGGCCAAGTCTTGAAGACTTATTTAATTACTGTAATAGAAAGCTTTCCTTGAAGACTGCATTGATGCTTGCTGATCAGCTAATTAAAAGGATTGAGTATGTACACAGCAAGAGCTTCCTTCATCGAGATATAAAACCTGATAATTTTCTCATGGGTCTTGGGCGGAAGGCAAATCAGGTTTACATGATAGATTTTGGGCTTGCCAAAAAATATCGGGAGCCTACAACTCATAAGCATATCCCTTACAGGGAAAACAAAAATCTCACAGGCACTGCTCGCTATGCTAGTATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCTGGGACCAAAAAGCAGAAGTATGAGAAAATAAGTGAGAAAAAAATGTCAACTCCAATTGAGGTGCTGTGCAAATCTTATCCGAAGGAGTTTGCATCATTTTTCCATTATTGTCGGTCTTTGCGATTCGATGACAAGCCAGATTATGCTTACCTGAAGGTTTTATTTCGTGAACTTTTCATTCGTGAGGGTTTTCAGTTTGATTTTGTATATGATTGGACTATATTGAAGTACCAGCAGTCCCAGATTGCTACTGCTGACCCTCGTTCCCATCCTGCTCTTGTAGCTGGAAAGTTTGGCACAGGGGCTGGTGCTTCAGAGAGAATTTCAGCGGGGCAGGATGGCCGTGAGCGAAAGTCTGGAACAGGTGAAGGATCTCATCGAAGATCTAATGGGGGTAATGGTAATCTTCACAATATTGGTTCAGCAGATCAATATAGAAACAAGAATTTAGGGCTGGATGGCCCTTCAACATCAAAAGAAGTCCCAGACAGTGACCGTGGGCGTTCCTCCTTTACACGAGCTGGGAGTTCATCCAGGAGGGCAGTTGCTTCAAGCAGGCCGACTACAGCTGCTGATAATAGTGAGCGCTCCCGTTCCCTAACAAGTAGATTTGTTCCCAGGAGTCTTCGCTCTTCAAGTGCACAGCGCAGTTCAACACCAGCTACATCTGAGCCGAGAAGGATATTTGGTATTCGAAATGCATCAATGAAGGGCACGCCTGAGGATTCACTGAGGAGTTTTCAGTACTTGTCTGTAGATTCAGGACAGAAGCAGTGATAAGTAATTTGTCCAATTTTATGATTTTCGGGGAATTGAAAAGGTCTGTTCTAGCTTGGTATATCTAATTGGCCAATTCCGCTGTCATTTGTTCTTGCTGTTTGAGATTAAGTCCTTACAAGAGGAATATATTTAAAATTAATCATAGGCTGGCCTTGATGGGGAAAGCAAATTCATACGTTTCGTGCATCTACATCGAGGATGAGCAGTTAAAAGACAAAGGAAAGCAGCCGAAGAGAGTGCATGCTTGACCAAACATTGTCTCAATGGGCCCTATTTTAAATTGTTGCTTGCCATTCATCATTTCTTGGGCATGTAATTCGTAGTCAACTCAGACAGCATACAACAAAACCCCAAGCTTCTATCCTGATTAGCTGTTTGGTTTCTCTATTTTACATAAATACGTATCGAGCTCTCATTTATCTCAATTTGGGTCTATCGAATTTAAAATAGCAGTTATTGTATGGTTAAATATGGTTGAAATCACTGCCTGTCCATGCAGAATCCAAAAAAATGTTCTCTTTACTTTCCAGGCAATTGCCAATCTGTTGAGTTTAATGTATTTGTACCTGTCTTGCTCAGAATGCTTGCATCTGTCCATCTCTGACTTGGCCTTCCAAATCAGATTACTGTGACATAAAGTCTGAAGTAAGAGGAGACAGAATGGAATAGTGGCTTGTTGTATCTATTTCTTTTTCATTGGTCATTCAGATGACGAGCTGCTGAGGAAACGTGATCTCATTGATCTGTTTTTCAATGCTTGTGTCAACAACCCTATAGAGATCACCTTGCTAGTTCCACTTAATTTCATGGGAAGTGAGGCATATCAGAAACAGAAATGGCCGTGCATCTCTTAGGGAATTTAAACGCAGCAAATTATAGCATGTGTGCCTCTCAGGGATACTTCATGCTTGTGTCATGCCGTAAGCAACATATTTGCATTTGGAG

Ace file of the UniGene sp_v3.0_unigene32109

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	casein kinase I-like [Oryza sativa Japonica Group]	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Putative casein kinase I	-	-	1.018e-29	-

Source	Gene names
Sma3	ADK1; AT4g08800; AT4g14340; AT4g28540; AT4g28860; AT4g28880; At1g03930; At1g04440; At1g72710; At1g72710/F28P22.10; At2g19470; At3g23340; At4g08800; At4g14340; At4g26100; At4g28540; At4g28860; At4g28880; At4g28880/F16A16_10; At5g43320; At5g44100; At5g57015

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57015.1	ckl12 casein kinase I-like 12 chr5:23071508-23074577 FORWARD LENGTH=435	77%
RefSeq	Arabidopsis thaliana	NP_680447.1	casein kinase I-like 12 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002330485.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg:

Fln protein: MEPKVGEKYRLGRKIGSGSFGEIYLGTNILTNEEVGIKLESVKTKHPQLLYESKVYRILQGGGTEGGIPNVRWFGVEGDYNAMVLDLLGPSLEDLFNYCNRKLSLKTALMLADQLIKRIEYVHSKSFLHRDIKPDNFLMGLGRKANQVYMIDFGLAKKYREPTTHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAGTKKQKYEKISEKKMSTPIEVLCKSYPKEFASFFHYCRSLRFDDKPDYAYLKVLFRELFIREGFQFDFVYDWTILKYQQSQIATADPRSHPALVAGKFGTGAGASERISAGQDGRERKSGTGEGSHRRSNGGNGNLHNIGSADQYRNKNLGLDGPSTSKEVPDSDRGRSSFTRAGSSSRRAVASSRPTTAADNSERSRSLTSRFVPRSLRSSSAQRSSTPATSEPRRIFGIRNASMKGTPEDSLRSFQYLSVDSGQKQ*

Protein Length: 481

Fln nts: CGCAAAGGGTTTGAACCCACTGTCATAGTTAGGGTCAGATAGACCCTGGTTTGTGTCTTCCGAAAAGAGGAAGGACATGGAAGACTGAACAAGCCCCAGCCCCAGCCCAAGCCCAAGCCCATTGAGGCTTTACTGAAATGAAGCCCAGATGACTGAAATCTCATAATAATTACAATAGGAATGAAAAGGTTGATGGGCTTCATGATTGGAATCTAATATTGCAGCATGCTTCTTTGATTTCTAGTGGGAATTTCAGGTGTGTTTTGTGTGTGGCATTTTTGGAATAAGAATCATGCAATAACAGCTGAAAGCTGATGTGGGCATCTTTGAAAATAGTCCCAATGAGCCTAGAAATGTGTTTAAACTAGTGGGTTGCTGATTTCGGTAAGTGGGTATACGATTTTCTTTGTGTTTGAGCATAACACAGGCAATATACTTGATTAGTATCTGGGCAATGTATGACCTCAGAGCTTATGGATCATGCCTGCCTACTGTGAAAGGATCAAGCGGAGAAAAGATAAAATGAGGGCATTTTAATTGGGTTCAGATCGGATTGGAATTAGAGGATTTCAGTATATAGTCTGACATAACAGGAACATCAATAGATTATCACATTATCTCTTGAGCCAGGC_-_ATGGAGCCAAAGGTGGGGGAGAAATACAGACTGGGGAGAAAAATTGGCAGCGGTTCATTCGGGGAAATATACCTTGGGACCAATATTCTGACAAATGAGGAAGTTGGCATTAAACTGGAAAGTGTGAAAACTAAGCATCCTCAGCTGTTGTATGAGTCCAAAGTTTACAGAATACTCCAAGGAGGAGGAACAGAAGGTGGTATCCCAAATGTAAGATGGTTTGGTGTAGAAGGTGATTACAATGCCATGGTCCTTGATCTTCTTGGGCCAAGTCTTGAAGACTTATTTAATTACTGTAATAGAAAGCTTTCCTTGAAGACTGCATTGATGCTTGCTGATCAGCTAATTAAAAGGATTGAGTATGTACACAGCAAGAGCTTCCTTCATCGAGATATAAAACCTGATAATTTTCTCATGGGTCTTGGGCGGAAGGCAAATCAGGTTTACATGATAGATTTTGGGCTTGCCAAAAAATATCGGGAGCCTACAACTCATAAGCATATCCCTTACAGGGAAAACAAAAATCTCACAGGCACTGCTCGCTATGCTAGTATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCTGGGACCAAAAAGCAGAAGTATGAGAAAATAAGTGAGAAAAAAATGTCAACTCCAATTGAGGTGCTGTGCAAATCTTATCCGAAGGAGTTTGCATCATTTTTCCATTATTGTCGGTCTTTGCGATTCGATGACAAGCCAGATTATGCTTACCTGAAGGTTTTATTTCGTGAACTTTTCATTCGTGAGGGTTTTCAGTTTGATTTTGTATATGATTGGACTATATTGAAGTACCAGCAGTCCCAGATTGCTACTGCTGACCCTCGTTCCCATCCTGCTCTTGTAGCTGGAAAGTTTGGCACAGGGGCTGGTGCTTCAGAGAGAATTTCAGCGGGGCAGGATGGCCGTGAGCGAAAGTCTGGAACAGGTGAAGGATCTCATCGAAGATCTAATGGGGGTAATGGTAATCTTCACAATATTGGTTCAGCAGATCAATATAGAAACAAGAATTTAGGGCTGGATGGCCCTTCAACATCAAAAGAAGTCCCAGACAGTGACCGTGGGCGTTCCTCCTTTACACGAGCTGGGAGTTCATCCAGGAGGGCAGTTGCTTCAAGCAGGCCGACTACAGCTGCTGATAATAGTGAGCGCTCCCGTTCCCTAACAAGTAGATTTGTTCCCAGGAGTCTTCGCTCTTCAAGTGCACAGCGCAGTTCAACACCAGCTACATCTGAGCCGAGAAGGATATTTGGTATTCGAAATGCATCAATGAAGGGCACGCCTGAGGATTCACTGAGGAGTTTTCAGTACTTGTCTGTAGATTCAGGACAGAAGCAGTGA___TAAGTAATTTGTCCAATTTTATGATTTTCGGGGAATTGAAAAGGTCTGTTCTAGCTTGGTATATCTAATTGGCCAATTCCGCTGTCATTTGTTCTTGCTGTTTGAGATTAAGTCCTTACAAGAGGAATATATTTAAAATTAATCATAGGCTGGCCTTGATGGGGAAAGCAAATTCATACGTTTCGTGCATCTACATCGAGGATGAGCAGTTAAAAGACAAAGGAAAGCAGCCGAAGAGAGTGCATGCTTGACCAAACATTGTCTCAATGGGCCCTATTTTAAATTGTTGCTTGCCATTCATCATTTCTTGGGCATGTAATTCGTAGTCAACTCAGACAGCATACAACAAAACCCCAAGCTTCTATCCTGATTAGCTGTTTGGTTTCTCTATTTTACATAAATACGTATCGAGCTCTCATTTATCTCAATTTGGGTCTATCGAATTTAAAATAGCAGTTATTGTATGGTTAAATATGGTTGAAATCACTGCCTGTCCATGCAGAATCCAAAAAAATGTTCTCTTTACTTTCCAGGCAATTGCCAATCTGTTGAGTTTAATGTATTTGTACCTGTCTTGCTCAGAATGCTTGCATCTGTCCATCTCTGACTTGGCCTTCCAAATCAGATTACTGTGACATAAAGTCTGAAGTAAGAGGAGACAGAATGGAATAGTGGCTTGTTGTATCTATTTCTTTTTCATTGGTCATTCAGATGACGAGCTGCTGAGGAAACGTGATCTCATTGATCTGTTTTTCAATGCTTGTGTCAACAACCCTATAGAGATCACCTTGCTAGTTCCACTTAATTTCATGGGAAGTGAGGCATATCAGAAACAGAAATGGCCGTGCATCTCTTAGGGAATTTAAACGCAGCAAATTATAGCATGTGTGCCTCTCAGGGATACTTCATGCTTGTGTCATGCCGTAAGCAACATATTTGCATTTGGAG

Fln Alignment:

Contig32109___MEPKVGEKYRLGRKIGSGSFGEIYLGTNILTNEEVGIKLESVKTKHPQLLYESKVYRILQGGGTEGGIPNVRWFGVEGDYNAMVLDLLGPSLEDLFNYCNRKLSLKTALMLADQLIKRIEYVHSKSFLHRDIKPDNFLMGLGRKANQVYMIDFGLAKKYREPTTHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAGTXXXXXXXXXXXXMSTPIEVLCKSYPKEFASFFHYCRSLRFDDKPDYAYLKVLFRELFIREGFQFDFVYDWTILKYQQSQIATADPRSHPALVAGKFGTGAGASERISAGQDGRE
A9NUC1_______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNEEVAIKLENVKTKHPQLVYEAKLYRLLQGGT---GIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSIGAAV-GSSSRAPPVADKSSGGQDGRD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
106		87	12		0.992554
107		87	12		0.992554
108		87	12		0.992554
133	11	88			0.923564
136	88			11	0.923564
500		33	66		1.0
1504	75			25	0.996473
2262		4		95	0.995881
2270	4		95		0.995881
2526	26	73			1.0
2774			50	50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
104	121	AGCCCA AGCCCA AGCCCA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain