SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32067

Length: 529 nt

UniGene Fasta

>sp_v3.0_unigene32067
TGTACAATCTGGTTCTGGCCATGCTGTGGCGACATCCCCAGAACGTGGACTTGGACACTGTCAAAGTTGTTCACTATTGCGCTGCTGGATCAAAGCCTTGGAGGTACAGTGGGAAGGAGGAAAATATGGAGAGGGAAGATATAAAGACGTTGGTGCACAAATGGTGGGACATATACAATGACCCCTCTCTCGATCACTTGGGATCAGGAGGTATTACAATTCCAGATCCAATTTCAGATGCGGACGGAAAATCCAACGATCTGCAACAGGTGGCTGCTAATTCATTCCTTGCTGCGATGCCAACAAACCCCAACATAATGCCTGCACCGCCTGCCGCTTAAGAGATTTCAAATTTCCAAAAGTTGGTGTGTAGTAAAATAGATGTGTATATATTATAAACCAGTGGCAGAGGTGGGGACAATTTTTTTATATATGATACGGAAGATCATAACGGTATATCCTCGAAGGTTGACGATTTTGCCGTTGTGCCTACGGATATTGATTGTAAATGAATTCAGTTTAACATTTG

Ace file of the UniGene sp_v3.0_unigene32067

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Galactinol synthase n=3 Tax=Brassica napus RepID=B6ZBV9_BRANA	-	-	8.0e-29	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Galactinol synthase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	4.756e-30	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		4.756e-30	%

Source	Gene names
Sma3	AT4g26250; At1g09350; At1g56600; At1g60450; At1g60470; At2g47180; At4g26250; At5g23790; At5g30500; AtGolS1; AtGolS2; AtGolS3; CjGolS; F14J9.1; F25P12.95; F8A5.2; GAS1; GAS2; GOLS1; GS; GSVIVT00002727001; GSVIVT00019669001; GSVIVT00022558001; GSVIVT0002256

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56600.1	AtGolS2, GolS2 galactinol synthase 2 chr1:21207620-21209291 FORWARD LENGTH=335	3.0e-34	65%
RefSeq	Arabidopsis thaliana	NP_176053.1	galactinol synthase 2 [Arabidopsis thaliana]	4.0e-34	65%
RefSeq	Populus trichocarpa	XP_002319472.1	predicted protein [Populus trichocarpa]	3.0e-36	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQN6

Fln msg: your sequence is shorter than subject: 113 - 345

Fln protein: YNLVLAMLWRHPQNVDLDTVKVVHYCAAGSKPWRYSGKEENMEREDIKTLVHKWWDIYNDPSLDHLGSGGITIPDPISDADGKSNDLQQVAANSFLAAMPTNPNIMPAPPAA*

Protein Length: 114

Fln nts: TGTACAATCTGGTTCTGGCCATGCTGTGGCGACATCCCCAGAACGTGGACTTGGACACTGTCAAAGTTGTTCACTATTGCGCTGCTGGATCAAAGCCTTGGAGGTACAGTGGGAAGGAGGAAAATATGGAGAGGGAAGATATAAAGACGTTGGTGCACAAATGGTGGGACATATACAATGACCCCTCTCTCGATCACTTGGGATCAGGAGGTATTACAATTCCAGATCCAATTTCAGATGCGGACGGAAAATCCAACGATCTGCAACAGGTGGCTGCTAATTCATTCCTTGCTGCGATGCCAACAAACCCCAACATAATGCCTGCACCGCCTGCCGCTTAA___GAGATTTCAAATTTCCAAAAGTTGGTGTGTAGTAAAATAGATGTGTATATATTATAAACCAGTGGCAGAGGTGGGGACAATTTTTTTATATATGATACGGAAGATCATAACGGTATATCCTCGAAGGTTGACGATTTTGCCGTTGTGCCTACGGATATTGATTGTAAATGAATTCAGTTTAACATTTG

Fln Alignment:

Contig32067___YNLVLAMLWRHPQNVDLDTVKVVHYCAAGSKPWRYSGKEENMEREDIKTLVHKWWDIYNDPSLDHLGSGGITIPDPISDADGKSNDLQQVAANSFL
A9NQN6_______________YNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRFSGKEENMEREDIKTLVQKWWDIYNDPSLDHLGSGD-TVPDPISEADGKSNDLQQVAANSFL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
194		80		20	0.995493
199		80		20	0.995493
202	20		80		0.995493
213	85	14			0.993533
214	28			71	1.0
262	42			57	1.0
270	28		71		1.0
296	40		60		1.0
329	40		60		1.0
335	40	60			1.0
367		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain