SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31865

Length: 387 nt

UniGene Fasta

>sp_v3.0_unigene31865
GTACGAGATGGTCGATGAAAATGGGGACGGAAAACTGACCGTAACTGAAATGAATCACTACCTCAAAAGGCTCGGATTCGATATTTCAGAGGAGGACTTGAAATGTCTGGTTGCACCAGTTTCTGAGAGCGAAGACGGTAGCTTGACATTGGATGAATTTGTTGGCCTCTATCACTCCATCCTGGGTGATAGATCAGAAGATCTGTTAAACGACGGCAATGGGTGCGATGATTTGATGGAGGCTTTCAAGGTATATGATATGAATAATGATGGATTCATCTCCTCCACAGAGCTTCAACAGGTGCTCCGTAATTTGAGGTTGATGGAGGGTGAAGAGTTGGTCAATTGCCAGAAGATGATAGGCATATATGATTCAGACTCCAACGG

Ace file of the UniGene sp_v3.0_unigene31865

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-like protein 3 n=2 Tax=Arabidopsis RepID=CML3_ARATH	-	-	7.0e-18	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM84

Fln msg: Distance to subject end: 33 aas, atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 126 - 177

Fln protein: MVDENGDGKLTVTEMNHYLKRLGFDISEEDLKCLVAPVSESEDGSLTLDEFVGLYHSILGDRSEDLLNDGNGCDDLMEAFKVYDMNNDGFISSTELQQVLRNLRLMEGEELVNCQKMIGIYDSDSN

Protein Length: 127

Fln nts: GTACGAG_-_ATGGTCGATGAAAATGGGGACGGAAAACTGACCGTAACTGAAATGAATCACTACCTCAAAAGGCTCGGATTCGATATTTCAGAGGAGGACTTGAAATGTCTGGTTGCACCAGTTTCTGAGAGCGAAGACGGTAGCTTGACATTGGATGAATTTGTTGGCCTCTATCACTCCATCCTGGGTGATAGATCAGAAGATCTGTTAAACGACGGCAATGGGTGCGATGATTTGATGGAGGCTTTCAAGGTATATGATATGAATAATGATGGATTCATCTCCTCCACAGAGCTTCAACAGGTGCTCCGTAATTTGAGGTTGATGGAGGGTGAAGAGTTGGTCAATTGCCAGAAGATGATAGGCATATATGATTCAGACTCCAACGG

Fln Alignment:

Contig31865___YEMVDENGDGKLTVTEMNHYLKRLGFDISEEDLKCLVAPVSESEDGSLTLDEFVGLYHSILGD-RSE-XXXXXXXXXXXXMEAFKVYDMNNDGFISSTELQQVLRNLRLMEGEELVNCQKMIGIYDSDSN
A9NM84_______________YETINENGDGRLTVNEMNRSLNRIGIDISEEDLKYLVIPMSQSEDGSLTFDEFVGLCQSILDDTRSEDELRNGEEGCEDLMEAFKVYDMNNDGFISSTELQRVLCNLGFVEGEELDNCQKMICRYDSDSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain