SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31821

Length: 753 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31821 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBL-interacting serine/threonine-protein kinase 20 [Arabidopsis thaliana] sp\|Q9FJ54.1\|CIPKK_ARATH RecName: Full=CBL-interacting serine/threonine-protein kinase 20; AltName: Full=SNF1-related kinase 3.6; AltName: Full=SOS2-like protein kinase PKS18 dbj\|BAB	-	-	8.0e-36	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	CBL-interacting serine/threonine-protein kinase, putative	-	-	1.589e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	5.698e-09	-
Sma3	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	2.453e-16	-

Source	Gene names
Sma3	At1g01140; At4g30960; At5g45820; CIPK; CIPK1; CIPK10; CIPK11; CIPK12; CIPK13; CIPK14; CIPK17; CIPK18; CIPK19; CIPK2; CIPK20; CIPK22; CIPK24; CIPK25; CIPK26; CIPK28; CIPK5; CIPK6; CIPK7; CIPK8; CIPK9; F6F3.28; F6I18.130; GSVIVT00013357001; GSVIVT0002396100

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45820.1	CIPK20, SnRK3.6, PKS18 CBL-interacting protein kinase 20 chr5:18587081-18588400 REVERSE LENGTH=439	3.9937e-43	48%
RefSeq	Arabidopsis thaliana	NP_199394.1	CBL-interacting serine/threonine-protein kinase 20 [Arabidopsis thaliana]	5.00264e-43	48%
RefSeq	Populus trichocarpa	XP_002323059.1	predicted protein, partial [Populus trichocarpa]	3.99931e-42	45%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
149		25		75	0.996473
168	75	25			0.996473
196	75	25			0.996473
205		15	53	30	1.0
263	21		78		1.0
271	14		85		0.999981
325			11	88	0.923564
341		85		14	0.993533
348	14		85		0.993533
379	16		83		0.994512
380			83	16	0.994512
389	83	16			0.994512
404		80		20	0.995493
405		80	20		0.995493
406	20	80			0.995493
407		80	20		0.995493
412	80	20			0.995493
414	20			80	0.995493
415	20			80	0.995493
416		80	20		0.995493
417	80		20		0.995493
420	20			80	0.995493
421		20		80	0.995493
424	80	20			0.995493
568	75		25		0.996473
640	25	75			0.996473
644			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
522	537	TCC TCC TCC TCC TCC T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain