SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31743

Length: 306 nt

UniGene Fasta

>sp_v3.0_unigene31743
TATCATAGCGGTGAAAAAGCAGCCATTAGATTGCATAAAATTCAATTTCAGAGGAATCCCGATGGAGACATGTGCAGAAGAGGTGCAAGTGAAGCTGCTAGGTGGCAGATCAAGTCCCTTTGTGCTGCGGGTCCGCATAGCACTTGCTCTTAAAGGGATCCATTATGAGCACATCGAAGAGACTATGAATCCTAAGAGCGAGCTGCTGCTGAAATCGAACCCTGTCCACAAGAAGATTCCTGTGCTCGTCCACAATGGAAAGCCAATTTGTGAGTCCATGATTATTGTGCAGTACATAGACGAGAC

Ace file of the UniGene sp_v3.0_unigene31743

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	5.0e-30	81%
FL-Next	tr=Probable glutathione S-transferase; Picea mariana (Black spruce) (Abies mariana).	-	-	0.0	81%
Sma3	Glutathione S-transferase GSTU6	-	-	3.92364e-44	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		0.0	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		0.0	%
Sma3	Drug metabolism - cytochrome P450	00982		0.0	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	1.883e-29	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		1.883e-29	%

Source	Gene names
Sma3	103-1A; AT1G10360; AcGSTU9-44; At1g10360; At1g59700; At2g29420; At2g29450; B1064G04.4; B1144D11.26; Dcarg-1; ERD9; F16P2.17; F23H11.1; GST; GST1; GST180; GST1a; GST1b; GST2; GST25; GST29; GST30; GST30b; GST33; GSTU1; GSTU2; GSTU3; GSTU5; GSTU9; GSTa; GSVI

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	glutathione binding	GO:0043295	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10360.1	ATGSTU18, GST29, GSTU18 glutathione S-transferase TAU 18 chr1:3395738-3396806 REVERSE LENGTH=227	4.0e-26	66%
RefSeq	Arabidopsis thaliana	NP_172507.1	glutathione S-transferase TAU 18 [Arabidopsis thaliana]	5.0e-26	66%
RefSeq	Populus trichocarpa	XP_002332367.1	predicted protein [Populus trichocarpa]	1.0e-28	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: O65056

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 81 - 237

Fln protein: METCAEEVQVKLLGGRSSPFVLRVRIALALKGIHYEHIEETMNPKSELLLKSNPVHKKIPVLVHNGKPICESMIIVQYIDE

Protein Length: 82

Fln nts: TATCATAGCGGTGAAAAAGCAGCCATTAGATTGCATAAAATTCAATTTCAGAGGAATCCCG_-_ATGGAGACATGTGCAGAAGAGGTGCAAGTGAAGCTGCTAGGTGGCAGATCAAGTCCCTTTGTGCTGCGGGTCCGCATAGCACTTGCTCTTAAAGGGATCCATTATGAGCACATCGAAGAGACTATGAATCCTAAGAGCGAGCTGCTGCTGAAATCGAACCCTGTCCACAAGAAGATTCCTGTGCTCGTCCACAATGGAAAGCCAATTTGTGAGTCCATGATTATTGTGCAGTACATAGACGAGAC

Fln Alignment:

Contig31743___METCAEEVQVKLLGGRSSPFVLRVRIALALKGIHYEHIEETMNPKSELLLKSNPVHKKIPVLVHNGKPICESMIIVQYIDE
O65056_______________MEACGEEAQVKLLGGNISPFVLRVRIALALKGIDYEFIEENMQNKSHLLLQSNPVNKKIPVLIHNGKPVCESMIIVQYIDE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
114			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain