SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31680

Length: 410 nt

UniGene Fasta

>sp_v3.0_unigene31680
ACGCTTTGGCCAAGCTCAAGTGCTTCGAGGGCATCCCGGCTCCGTATGACAAAGTCAAGCGAGTTGTTGTTCCATCTGCCTTGAGAACCTTGAAGCTCAAGCCCAGACGTGATTACTGCGAGCTCAGCCGTATTTCTCACGAGGTCGGCTGGAAGTACCAGGACGTGATTGCCACTCTTGAGGCCAAGAGAAAGGTCAAGTCGAAGTTGTTCTATGCCAAGAAGCAGAAGGAACAGAGAATCAAGAAGAAGGCTGTTGCTTCGCTCGGCGCCAAGCTCGAGAAGCACCAGAAAGTCATCGAGGCCTTCGGACACTAAATCTCCTTCTGTGCCTGCTTTTTTGCCTGTTTGTTCTTGTAGACATATGTTCGATGCGTTCGATATTTTTATGAGAATAAACGAGTGAAATGT

Ace file of the UniGene sp_v3.0_unigene31680

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L13A n=1 Tax=Lycosa singoriensis RepID=A9QQ28_LYCSI	-	-	3.0e-28	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	Gene names
Sma3	CHLREDRAFT_162845; GSVIVT00019003001; RPL13a;

Source	GOs	Term	Type	Identity
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	0.0	-
Sma3	Ribosomal protein L13	IPR005822	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13170.1	Ribosomal protein L13 family protein chr4:7655133-7656542 REVERSE LENGTH=206	5.0e-22	56%
RefSeq	Arabidopsis thaliana	NP_193053.1	60S ribosomal protein L13a-3 [Arabidopsis thaliana]	6.0e-22	56%
RefSeq	Populus trichocarpa	XP_002323772.1	predicted protein [Populus trichocarpa]	2.0e-22	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg: your sequence is shorter than subject: 105 - 206

Fln protein: ALAKLKCFEGIPAPYDKVKRVVVPSALRTLKLKPRRDYCELSRISHEVGWKYQDVIATLEAKRKVKSKLFYAKKQKEQRIKKKAVASLGAKLEKHQKVIEAFGH*

Protein Length: 106

Fln nts: ACGCTTTGGCCAAGCTCAAGTGCTTCGAGGGCATCCCGGCTCCGTATGACAAAGTCAAGCGAGTTGTTGTTCCATCTGCCTTGAGAACCTTGAAGCTCAAGCCCAGACGTGATTACTGCGAGCTCAGCCGTATTTCTCACGAGGTCGGCTGGAAGTACCAGGACGTGATTGCCACTCTTGAGGCCAAGAGAAAGGTCAAGTCGAAGTTGTTCTATGCCAAGAAGCAGAAGGAACAGAGAATCAAGAAGAAGGCTGTTGCTTCGCTCGGCGCCAAGCTCGAGAAGCACCAGAAAGTCATCGAGGCCTTCGGACACTAA___ATCTCCTTCTGTGCCTGCTTTTTTGCCTGTTTGTTCTTGTAGACATATGTTCGATGCGTTCGATATTTTTATGAGAATAAACGAGTGAAATGT

Fln Alignment:

Contig31680___ALAKLKCFEGIPAPYDKVKRVVVPSALRTLKLKPRRDYCELSRISHEVGWKYQDVIATLEAKRKVKSKLFY
A9NNL7_______________ALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
179			25	75	0.996473
260		25		75	0.996473
266		75		25	0.996473
269		75		25	0.996473
278		75	25		0.996473
284	25		75		0.996473
303			66	33	0.997452
305		66		33	0.997452
323		66	33		0.997452
324		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain