SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31650

Length: 2982 nt

UniGene Fasta

>sp_v3.0_unigene31650
CATTATTCAGATTCTCTGCTGCTTCATCATCATTAGTGCAATGCAATGAAAGTGGGGGAGTTGAGAGGGCGTGAGCGAGTGAGGGAATGAGATAATATGGAAGATTCTTGTTCATCTTCTTCTCCGCCACAGTCCACGGAAGAAGGCGACCTGCTATCGCCATCCCGCCACCAATGTCAATCATTGATAAACATTGTGAATGAGATAGTTGTCATTGGGGATTACAGAAGAACCCACAGGAAAGATTGCATGACTCTGGTCAGAAGAATTAAACTGTTGATGCCCTTGTTTGAGGAATTGAAGGACATGGTATCCACACCTCACGAAGCTTTTTTCTCCTCTGTTTCTTCTCTGGAAAAGGCGCTGCTGTCTGCCAAAACTTTGCTTCAACTTTGCCATGATGGCAGTAAACTCTATTTGGTTCTAGAGCGTGAAGCAATCGCAGGGTGGTTTGTGCAGTTGACAGAAGAACTGGATCAGGCTTTAGATGGCTTGTCTTATAAACAACTGAAAGTTTCGGATGAAGTTCGAGAACAGGTTGAATTAATGCACTTGCAGTTAAAGAGATCCAAAGGGAGGGCTGATACTCAAGATATTGAACTTTATATGGATATTATGATTGCCCTTTCACACAAGGATGGTAGAAATGCAGATTCTGCTGTTCTGGAAAGGCTAGCAGACAAACTCCAGCTTGGAACAGTGTCAGATTTAACTGTGGAGTCAAGGGCAGTGGATAAACTTATGAAAGAAAGAGGTGGTGATATTGGTGAGACTGCCGAACATATACTTTATCTTCTGAAAAAGATGAAAGATATGCAAGAGATTGGAAGCCTTGGAGGAGATACGATTGGTTTGGACAGTCTCTCTTTATCTGAAGTCTCATTAGAGAAGATTAGTTCTCCTGTTTGTCCAGAAGACTTCCGTTGTCCAATTTCATTAGACATAATGCAAGATCCTGTTATTGTTGCCACAGGACAGACGTATGACCGATTATACATTCAGAGATGGCTTGACTCAGGACACAAAACATGCCCCAAAACTCAGCAAGTTTTACCCCACCTGACTTTAACACCAAATTACGTTCTTCGAAGCTTGATTGCACAATGGTGTGAAAGGCATGGTGTTGAAATGCCAAATAAAGCAGGTTCTAGTCGGTCTGATAGCTCGGATGTCTCTTTTGGAAACAGAACAAGTATAGATATTTTGGTCCAGCAGCTCTATTCTAGACAGATAGATGCGCAAAGAGCTGCTGCAGAAGAGATTCGACTACTTGCAAAAAGAAATGCAGATAACAGGCTTTTAATTGCAGAGGCAGGAGCTATTCCACAGTTAGTGAAATTGTTATCTTCAACTGACATGAAGACCCAGGAGCATGCAGTCACTGCCCTTTTAAATTTATCTATTCACAGCAGCAATAAGGGATTTATTGTTCAAGCAGGTGCTATCAATCGTATAATAGATGTCCTGAAGCATGGTAGCATGGAAGCAAGAGAAAATGCAGCTGCGACCCTTTTCAGCTTGTCTGTCGTGGATGAGAATAAAGTGATCATTGGGGCTTCAGGAGCCATCCCTCCTTTAGTTGATCTACTTCGTGATGGAACTGTGAGAGGGAAAAAGGATGCTGCTACTGCTATTTTTAATTTATCAATTTATCAAGGGAACAAATTTAGGGCTGTTAGGGCTGGAGTTGTTCCTCCTCTAATAGTGTTGCTTGTTGACCAAAGCATTGGAATGGTTGATGAAGCTCTTGCTATTCTTGCAATACTTGCTACTCATCAGGAGGGCCGGATTGCCATTGGCCAGCAATCTGCTATAGATATCCTTGTTGAATTGATCCATTCAGGTTCAGCTCGTAACAAGGAGAATGCTGCTGCTGTATTGCTGGCTTTGGGTATGAATGATTCATCTCATTTGTTGGCAGCAATGCAGCTTGGTGTATTTGAATACTTGATTGAACTTGCTCAGAATGGAACTGCTAGAGCCAGACGGAAGGCAAGAGATCTGTTGAACCTTATAAGCAAACAGGAACATGTTCCATAAATGTGCCCGTGTACTTCATAAACTAGATGGCTGAACATGAACTGCATGTCATGAAAATTAAAGGGTGCATTCTTAATTGGAAATGTAACCCTCAAATTTAAGGTTGCATTCTTTATCAGGTATTGTTAAAGGAACAAAGTTACCTGACAGCAATTGGGATCCCTTTTACTGTCTTCCAATCCCTTGGGATTCTAGTTCTGCACCAGACGTGACATCACCCTCACTGGATTTTAAACTTCTTAACTTGGATTCTATATTTGGGCATGTGTCTGTGGAGAAGTTAGTTTGGTGCTTCGACATGTTCTGCTAGAATATTTCTGGTGCACGTTTAAATGTGTTTCAGCTTCAGTGGTTTTAAGGCCAGAAGGAGCGTTGACAAACATGACCAGCCTTATAGTTCTGGTGTTACTTACCAGAACTTGTGCATACTGAAGGAAACTAACAATTTACATTTTTGAAGGGGGATGCTGTTCTTGCTTGTAGTTGGGATGGTTAGGATGAAGAGAATCTTTATCTGATTTGACAAGTTAGAGAGTAGTGTGGGTGGATGCTGCTGGATTTAGACTTGCAGATTATGAATGGTGCAGTGGACAGATAAATGAAAAGAAGCATGCAATTGCTTGGGAAGCTTTAGAACAAGCAAGCATCCCAGGAACGAAAGCTTACCAGGCTATTACACCATTTGCATTCTTCAATCAAGGACATCAGACACGAAGTGTCAGGATGTCTAGACAAAGTTCATTTTGATGGTTATGTTTGTCATCAGTCAACTGTGAACCTACTGCGATAATACTATATTTTTAATTTATCGTTGATTCTGTTCTTGTAATCTGAAAACACAGATTAATGCTGCTCTATTGTTCAGAGAAGCTGTAACTCGGAAGACTATTCATAAAATTTTTAAATTTTGGCAAGAATAGAATTCTCTTCCTGATGGAATTT

Ace file of the UniGene sp_v3.0_unigene31650

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-protein ligase, PUB13 n=2 Tax=Selaginella moellendorffii RepID=D8SNN8_SELML	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46510.1	PUB13, ATPUB13 plant U-box 13 chr3:17124106-17126539 REVERSE LENGTH=660	53%
RefSeq	Arabidopsis thaliana	NP_190235.1	U-box domain-containing protein 13 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002313440.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is longer than subject: 648 - 497

Fln protein: MEDSCSSSSPPQSTEEGDLLSPSRHQCQSLINIVNEIVVIGDYRRTHRKDCMTLVRRIKLLMPLFEELKDMVSTPHEAFFSSVSSLEKALLSAKTLLQLCHDGSKLYLVLEREAIAGWFVQLTEELDQALDGLSYKQLKVSDEVREQVELMHLQLKRSKGRADTQDIELYMDIMIALSHKDGRNADSAVLERLADKLQLGTVSDLTVESRAVDKLMKERGGDIGETAEHILYLLKKMKDMQEIGSLGGDTIGLDSLSLSEVSLEKISSPVCPEDFRCPISLDIMQDPVIVATGQTYDRLYIQRWLDSGHKTCPKTQQVLPHLTLTPNYVLRSLIAQWCERHGVEMPNKAGSSRSDSSDVSFGNRTSIDILVQQLYSRQIDAQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSMEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIVLLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARDLLNLISKQEHVP*

Protein Length: 649

Fln nts: CATTATTCAGATTCTCTGCTGCTTCATCATCATTAGTGCAATGCAATGAAAGTGGGGGAGTTGAGAGGGCGTGAGCGAGTGAGGGAATGAGATAAT_-_ATGGAAGATTCTTGTTCATCTTCTTCTCCGCCACAGTCCACGGAAGAAGGCGACCTGCTATCGCCATCCCGCCACCAATGTCAATCATTGATAAACATTGTGAATGAGATAGTTGTCATTGGGGATTACAGAAGAACCCACAGGAAAGATTGCATGACTCTGGTCAGAAGAATTAAACTGTTGATGCCCTTGTTTGAGGAATTGAAGGACATGGTATCCACACCTCACGAAGCTTTTTTCTCCTCTGTTTCTTCTCTGGAAAAGGCGCTGCTGTCTGCCAAAACTTTGCTTCAACTTTGCCATGATGGCAGTAAACTCTATTTGGTTCTAGAGCGTGAAGCAATCGCAGGGTGGTTTGTGCAGTTGACAGAAGAACTGGATCAGGCTTTAGATGGCTTGTCTTATAAACAACTGAAAGTTTCGGATGAAGTTCGAGAACAGGTTGAATTAATGCACTTGCAGTTAAAGAGATCCAAAGGGAGGGCTGATACTCAAGATATTGAACTTTATATGGATATTATGATTGCCCTTTCACACAAGGATGGTAGAAATGCAGATTCTGCTGTTCTGGAAAGGCTAGCAGACAAACTCCAGCTTGGAACAGTGTCAGATTTAACTGTGGAGTCAAGGGCAGTGGATAAACTTATGAAAGAAAGAGGTGGTGATATTGGTGAGACTGCCGAACATATACTTTATCTTCTGAAAAAGATGAAAGATATGCAAGAGATTGGAAGCCTTGGAGGAGATACGATTGGTTTGGACAGTCTCTCTTTATCTGAAGTCTCATTAGAGAAGATTAGTTCTCCTGTTTGTCCAGAAGACTTCCGTTGTCCAATTTCATTAGACATAATGCAAGATCCTGTTATTGTTGCCACAGGACAGACGTATGACCGATTATACATTCAGAGATGGCTTGACTCAGGACACAAAACATGCCCCAAAACTCAGCAAGTTTTACCCCACCTGACTTTAACACCAAATTACGTTCTTCGAAGCTTGATTGCACAATGGTGTGAAAGGCATGGTGTTGAAATGCCAAATAAAGCAGGTTCTAGTCGGTCTGATAGCTCGGATGTCTCTTTTGGAAACAGAACAAGTATAGATATTTTGGTCCAGCAGCTCTATTCTAGACAGATAGATGCGCAAAGAGCTGCTGCAGAAGAGATTCGACTACTTGCAAAAAGAAATGCAGATAACAGGCTTTTAATTGCAGAGGCAGGAGCTATTCCACAGTTAGTGAAATTGTTATCTTCAACTGACATGAAGACCCAGGAGCATGCAGTCACTGCCCTTTTAAATTTATCTATTCACAGCAGCAATAAGGGATTTATTGTTCAAGCAGGTGCTATCAATCGTATAATAGATGTCCTGAAGCATGGTAGCATGGAAGCAAGAGAAAATGCAGCTGCGACCCTTTTCAGCTTGTCTGTCGTGGATGAGAATAAAGTGATCATTGGGGCTTCAGGAGCCATCCCTCCTTTAGTTGATCTACTTCGTGATGGAACTGTGAGAGGGAAAAAGGATGCTGCTACTGCTATTTTTAATTTATCAATTTATCAAGGGAACAAATTTAGGGCTGTTAGGGCTGGAGTTGTTCCTCCTCTAATAGTGTTGCTTGTTGACCAAAGCATTGGAATGGTTGATGAAGCTCTTGCTATTCTTGCAATACTTGCTACTCATCAGGAGGGCCGGATTGCCATTGGCCAGCAATCTGCTATAGATATCCTTGTTGAATTGATCCATTCAGGTTCAGCTCGTAACAAGGAGAATGCTGCTGCTGTATTGCTGGCTTTGGGTATGAATGATTCATCTCATTTGTTGGCAGCAATGCAGCTTGGTGTATTTGAATACTTGATTGAACTTGCTCAGAATGGAACTGCTAGAGCCAGACGGAAGGCAAGAGATCTGTTGAACCTTATAAGCAAACAGGAACATGTTCCATAA___ATGTGCCCGTGTACTTCATAAACTAGATGGCTGAACATGAACTGCATGTCATGAAAATTAAAGGGTGCATTCTTAATTGGAAATGTAACCCTCAAATTTAAGGTTGCATTCTTTATCAGGTATTGTTAAAGGAACAAAGTTACCTGACAGCAATTGGGATCCCTTTTACTGTCTTCCAATCCCTTGGGATTCTAGTTCTGCACCAGACGTGACATCACCCTCACTGGATTTTAAACTTCTTAACTTGGATTCTATATTTGGGCATGTGTCTGTGGAGAAGTTAGTTTGGTGCTTCGACATGTTCTGCTAGAATATTTCTGGTGCACGTTTAAATGTGTTTCAGCTTCAGTGGTTTTAAGGCCAGAAGGAGCGTTGACAAACATGACCAGCCTTATAGTTCTGGTGTTACTTACCAGAACTTGTGCATACTGAAGGAAACTAACAATTTACATTTTTGAAGGGGGATGCTGTTCTTGCTTGTAGTTGGGATGGTTAGGATGAAGAGAATCTTTATCTGATTTGACAAGTTAGAGAGTAGTGTGGGTGGATGCTGCTGGATTTAGACTTGCAGATTATGAATGGTGCAGTGGACAGATAAATGAAAAGAAGCATGCAATTGCTTGGGAAGCTTTAGAACAAGCAAGCATCCCAGGAACGAAAGCTTACCAGGCTATTACACCATTTGCATTCTTCAATCAAGGACATCAGACACGAAGTGTCAGGATGTCTAGACAAAGTTCATTTTGATGGTTATGTTTGTCATCAGTCAACTGTGAACCTACTGCGATAATACTATATTTTTAATTTATCGTTGATTCTGTTCTTGTAATCTGAAAACACAGATTAATGCTGCTCTATTGTTCAGAGAAGCTGTAACTCGGAAGACTATTCATAAAATTTTTAAATTTTGGCAAGAATAGAATTCTCTTCCTGATGGAATTT

Fln Alignment:

Contig31650___MHLQLKRSKGRADTQDIELYMDIMIALSHKDGRNADSAVLERLADKLQLGTVSDLTVESRAVDKLMKERGGDIGETAEHILYLLKKMKDMQEIGSLGGDTIGXXXXXXXXXXXXXXXXPVCPEDFRCPISLDIMQDPVIVATGQTYDRLYIQRWLDSGHKTCPKTQQVLPHLTLTPNYVLRSLIAQWCERHGVEMPNKAGXXXXXXXXXXFGNRTSIDILVQQLYSRQIDAQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSMEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIVLLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARDLLNLISKQEHVP
C0PSB5_______________MHLQLKRSKGRADTQDIELFMDIMIALSQKDGRNADSAVLERLADKLQLGTVSDLTVESRAVEKLMKERGGEMGETAEHILYLLKKMKGMQEIGNLGGDKIGFESLALSEVSLEKISSPIFPEDFRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHKTCPKTQQVLPHMTLTPNYVLRSLIAQWCESHGVEIPSKAGSSRSDSSDVSFGNRTSIDILVQQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARGLLDLISKQEHVP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
293		14		85	0.993533
2559	20	80			0.995493
2562	80		20		0.995493
2563			20	80	0.995493
2801		10		90	0.90298
2826		50	50		1.0
2916	40			60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain