SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31637

Length: 436 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31637 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S25 n=1 Tax=Lepidochitona cinerea RepID=E3P7H5_9MOLL	-	-	1.0e-18	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	40S ribosomal protein S25	-	-	5.89e-21	-

Source	Gene names
Sma3	AT4G39200; At2g16360; At2g21580; At4g34555; At4g39200; CHLREDRAFT_57302; CM0216.350.nc; F16F14.14; F2G1.15; GSVIVT00001420001; GSVIVT00007016001; GSVIVT00036348001; MICPUCDRAFT_28202; MICPUN_82663; OJ1003_C09.15; Os08g0559200; Os09g0568800; Os11g0153800;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S25	IPR004977	-	0.0	-
Sma3	NMD3	IPR007064	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39200.1	Ribosomal protein S25 family protein chr4:18257464-18258464 FORWARD LENGTH=108	3.0e-21	57%
RefSeq	Arabidopsis thaliana	NP_001119144.1	40S ribosomal protein S25-4 [Arabidopsis thaliana]	3.0e-21	57%
RefSeq	Populus trichocarpa	XP_002315432.1	predicted protein [Populus trichocarpa]	1.0e-19	55%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
78	33		66	0.997452
135	66	33		0.997452
181		80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
291	302	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain