SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31609

Length: 452 nt

UniGene Fasta

>sp_v3.0_unigene31609
AATGTGAACAGTGACTGCCACTCCGCTATTACATCCGGCAAAGGATTCGGAGCAACCATTCAAGCAATCAACGGAGCAATAGAATGCAACGGTGGAAACACAGACGAAGTGAATGACCGCGTCAGTTATTACACCAAATACTGTAGTCAATTCGGTGTAGATCCAGGAAGCAACCTTAGCTGTTAAGACTAATTGGTGCTCGAGCCTCTTGATTTCCATCCAGGGAGTTCAAATATGACAAATGAAATACTGTAGTCAATTCAGTGTAGATCCAGGAAGCAACCTTAGCTGTTAAGACTATTTGGTGCTCCAGCCTCTTGGTCTCATCCAGGAAGTTCAAATATGACAAATGTTCGATAGCACTCAATAAAGTGATAGAGGCTAAAAATCATTGTAGTATTACCTGTGTTTGACAAAATAGTGAAATTAAATAAAGGACGATTTTGTTATTG

Ace file of the UniGene sp_v3.0_unigene31609

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class II chitinase 2-2 n=1 Tax=Pseudotsuga menziesii RepID=D7P705_PSEMZ	-	-	2.0e-26	90%
FL-Next	tr=Class VII chitinase; Picea engelmannii x Picea glauca.	-	-	0.0	88%
Sma3	Class IV chitinase	-	-	1.213e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	2.773e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		2.773e-24	%

Source	Gene names
Sma3	At2g43590; At3g47540; At3g54420; Bcchi; CHB4; CHIV; Ch4; Ch4A; Chi4; Chi4D; Cht; Cht4; EP3; F1P2.90; GSVIVT00034626001; GSVIVT00034629001; GSVIVT00034632001; GSVIVT00034634001; GSVIVT00034636001; GSVIVT00034642001; GSVIVT00034646001; H0522A01.12; NaCHIT1;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54420.1	ATEP3, ATCHITIV, CHIV, EP3 homolog of carrot EP3-3 chitinase chr3:20145935-20147034 FORWARD LENGTH=273	3.0e-17	68%
RefSeq	Arabidopsis thaliana	NP_191010.1	chitinase [Arabidopsis thaliana]	4.0e-17	68%
RefSeq	Populus trichocarpa	XP_002339637.1	predicted protein, partial [Populus trichocarpa]	3.0e-19	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: G9B4E6

Fln msg: your sequence is shorter than subject: 62 - 231

Fln protein: NVNSDCHSAITSGKGFGATIQAINGAIECNGGNTDEVNDRVSYYTKYCSQFGVDPGSNLSC*

Protein Length: 63

Fln nts: AATGTGAACAGTGACTGCCACTCCGCTATTACATCCGGCAAAGGATTCGGAGCAACCATTCAAGCAATCAACGGAGCAATAGAATGCAACGGTGGAAACACAGACGAAGTGAATGACCGCGTCAGTTATTACACCAAATACTGTAGTCAATTCGGTGTAGATCCAGGAAGCAACCTTAGCTGTTAA___GACTAATTGGTGCTCGAGCCTCTTGATTTCCATCCAGGGAGTTCAAATATGACAAATGAAATACTGTAGTCAATTCAGTGTAGATCCAGGAAGCAACCTTAGCTGTTAAGACTATTTGGTGCTCCAGCCTCTTGGTCTCATCCAGGAAGTTCAAATATGACAAATGTTCGATAGCACTCAATAAAGTGATAGAGGCTAAAAATCATTGTAGTATTACCTGTGTTTGACAAAATAGTGAAATTAAATAAAGGACGATTTTGTTATTG

Fln Alignment:

Contig31609___NVNSDCHSAITSGKGFGATIQAINGAIECNGGNTDEVNDRVSYYTKYCSQFGVDPGSNLSC
G9B4E6_______________NVNSNCHTAITSGQGFGATIQAINGAIECNGGNPDEVNDRISHYTNYCSQFGVDPGSNLSC

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
176			33	66	0.997452
249	85		14		0.993533
275		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain