SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31534

Length: 1240 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene31534

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate mutase-like protein [Arabidopsis thaliana] emb\|CAB81831.1\| putative protein [Arabidopsis thaliana] gb\|ABD91496.1\| At3g60450 [Arabidopsis thaliana] gb\|AEE80063.1\| phosphoglycerate mutase-like protein [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	0.0	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60450.1	Phosphoglycerate mutase family protein chr3:22340982-22342187 FORWARD LENGTH=274	48%
RefSeq	Arabidopsis thaliana	NP_191604.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002326837.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPK4

Fln msg: Separated hits, possible frame ERROR between 121 and 124,

Fln protein: MPSLFPNLASTRYSYPWIEPLESSSESPACSKYTIKxxESRVRIPKRGRDFQNFILIRSMESSSKKEPFVQNLFVMRHGERMDNYDSEWIRSAQRPWDPPLTDGGKKEARETGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDHRLAIDPSKVKVSIEYGLCEVMNYIAIRTPPSSPDISWTIDRSELEAILPAGTVDHSVEPVWSELPHWPEKTEKAHERYSKTIQALADKFPRENVLCVTHGEGVGVSVSTFKKDAIVHAVEYCAYSHSQRSIFGSSTNGLNTEKFHVLTESGQSGIRFVTSKKIME*

Protein Length: 318

Fln nts: TTTGTCTGCT_-_ATGCCAAGTCTGTTTCCCAATCTGGCCAGTACACGATATTCCTACCCTTGGATCGAACCTTTGGAGTCTTCCTCTGAATCTCCTGCCTGCAGCAAGTACACTATCAAGCAxxxGGAGTCCAGGGTTCGAATCCCCAAACGAGGCAGAGATTTTCAAAATTTTATCTTGATTCGCAGCATGGAATCCAGTAGCAAGAAAGAGCCATTCGTGCAGAATTTATTCGTGATGAGGCACGGAGAAAGGATGGACAATTACGATTCGGAGTGGATTCGCTCGGCACAGAGGCCCTGGGATCCTCCATTGACCGACGGTGGCAAAAAAGAGGCTCGGGAGACGGGCGAAAGGCTGAGAACGCAGGGGTGGAATATAACTAGGGTGATCTGTTCCCCGTTCTTGCGTTGTATTCAGACTGCGGCCGAGGTCGTTACAGCTCTCTGCGCTGTGCAGGATCACCGCCTTGCCATCGATCCTTCTAAGGTCAAGGTGTCAATAGAATATGGTTTGTGTGAGGTAATGAATTACATTGCGATAAGAACCCCGCCTTCTTCACCAGACATTAGCTGGACAATTGACCGTTCTGAACTGGAAGCTATTTTACCAGCTGGAACGGTGGACCATTCTGTAGAGCCTGTATGGTCAGAGCTGCCCCATTGGCCAGAGAAAACTGAAAAAGCACATGAGAGATACTCAAAAACGATTCAAGCACTGGCAGATAAATTTCCACGAGAGAATGTTCTATGTGTTACTCATGGTGAAGGTGTTGGAGTTTCAGTTTCTACATTTAAAAAGGATGCAATTGTTCACGCAGTAGAATATTGTGCATATTCTCACTCTCAAAGATCCATATTTGGCTCTTCAACAAATGGGTTAAACACTGAAAAGTTTCACGTTTTGACAGAATCAGGCCAATCAGGGATTCGATTTGTAACAAGTAAAAAAATCATGGAGTAA___TTATACAAGTGCTATTGTTGTGCTTTATATTTGTTTAAAATATGTATCACAGAGAGATGGATGTGCATTATGAAACAATGAAACAGGATTCAAGATATTTCTTCATGTGCGCTTTTTCTTTTTTAAAAAGCAAAATTCATTTTAAGATGTAATGGACAACTATAACTCAAAAAGGGTTTGCTTTTTTTAAAAGTGGCAACCTAGAAAATATTTAATATTGTTTGCATATGCATTTTTTCTTGTAATCAAGAATAATGAGCTACTTCTGGTTTTGGTTTTG

Fln Alignment:

Contig31534___MPSLFPNLASTRYSYPWIEPLESSSESPACSKYTIKQxESRVRIPKRGRDFQNF------ILIRSMESSSKKEPFVQNLFVMRHGERMDNYDSEWIRSAQRPWDPPLTDGGKKEARETGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDHRLAIDPSKVKVSIEYGLCEVMNYIAIRTPPSSPDISWTIDRSELEAILPAGTVDHSVEPVWSELPHWPEKTEKAHERYSKTIQALADKFPRENVLCVTHGEGVGVSVSTFKKDAIVHAVEYCAYSHSQRSIFGSSTNGLNTEKFHVLTESGQSGIRF
A9NPK4_______________MRSVFPNLARTRYSHLWIEPLKSHSHSNTCNKYYIKRxESRVRILEQGYNFSKFSLIRGIVVIRSMESSSKKGPFVQNLFVMRHGERMDNYDPEWIASAPRPWDPPLTDDGKKEARKTGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDQPLAIDPSKVKVSIEYGLCEVMNQFAIRTPPSSPDISWTLDRSELEAILPAGTMDHSVEPVWPELPHWLEKTEKSHERYSKAIQALADKFPRENVLCVTHGEGVGVSVSAFKKDVIVNAVEYCAYSHSQRSIFGSSTDGLNAERFHVLTESDQSGIRF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
204	40		60		1.0
206	60	40			1.0
209	66		33		1.0
273	28		71		1.0
282		85		14	0.993533
298	14			85	0.993533
311		14		85	0.993533
407	11		88		0.923564
409			11	88	0.923564
411			11	88	0.923564
412	11		88		0.923564
501	90	10			0.90298
512			10	90	0.90298
513			90	10	0.90298
549	87		12		0.992554
724	16		83		0.994512
863		85		14	0.993533
898	16		83		0.999991
1061		77		22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain