SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31450

Length: 926 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31450 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana]	-	-	1.4013e-45	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Cinnamoyl-CoA reductase, putative	-	-	1.529e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	6.46e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	6.46e-06	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.46e-06	%
Sma3	Metabolic pathways	01100	6.46e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	6.46e-06	%

Source	Gene names
Sma3	AT4g30470; At2g23910; At4g30470; GSVIVT00013987001; GSVIVT00015738001; GSVIVT00017112001; LOC_Os10g42620; OSJNBa0027L23.8; Os10g0576900; OsJ_32578; POPTRDRAFT_590025; POPTRDRAFT_646255; POPTRDRAFT_825925; POPTRDRAFT_832029; POPTRDRAFT_895792; RCOM_0048650

Source	GOs	Term	Type	Identity
Sma3	small-subunit processome	GO:0032040	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	-
Sma3	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Small-subunit processome, Utp13	IPR013934	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30470.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:14894263-14896506 FORWARD LENGTH=303	58%
RefSeq	Arabidopsis thaliana	NP_194776.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002325101.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
162	25		75		0.996473
168		25		75	0.996473
173			50	50	1.0
248		50		50	1.0
272		60		40	1.0
310	35	64			1.0
392	85		14		0.993533
425	83		16		0.994512
473		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain