SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31431

Length: 613 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene31431

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ribosomal protein L35 n=1 Tax=Sipunculus nudus RepID=A8U9X0_SIPNU	-	-	6.0e-21	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	GSVIVT00029522001; PHYPADRAFT_110724; PHYPADRAFT_189477; PHYPADRAFT_214555; PHYPADRAFT_62237; POPTRDRAFT_653749;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L29	IPR001854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39390.1	Ribosomal L29 family protein chr2:16450803-16451762 REVERSE LENGTH=123	1.0e-22	48%
RefSeq	Arabidopsis thaliana	NP_181471.1	60S ribosomal protein L35-2 [Arabidopsis thaliana]	1.0e-22	48%
RefSeq	Populus trichocarpa	XP_002315252.1	predicted protein [Populus trichocarpa]	2.0e-22	48%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
163		87		12	0.992554
166		87		12	0.992554
181	87		12		0.992554
223		14		85	0.993533
259		14		85	0.993533
268	14	85			0.993533
280		80		20	0.995493
286		80		20	0.995493
287	80		20		0.995493
303	80		20		0.995493
304	20		80		0.995493
313		80		20	0.995493
321	80		20		0.995493
322	20		80		0.995493
329	20			80	0.995493
330	20	80			0.995493
344	20		80		0.995493
345	20	20	60		0.99255
355		80		20	0.995493
356			80	20	0.995493
365	80		20		0.995493
385		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain