SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31430

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene31430
CATTGTACAAAGGTGAATGGACCCACCCCCAAATTGACAACCCTGCCTACAAACCTGATGCATCTTTGTATGCTTTCGATTCCTTCAAATACCTCGGTATTGAAGTCTGGCAAGTGAAATCCGGTTCCGTCTTCGGAAACTTTTTGATCACCGACGAACCTGCAGTTGCCAAAAAGGCAGCCACCGAAATCTTGAAGCGAGTCCCTGGTGAGAAGGCCGCTGAAAAGGCTGAACAAGATGCCGCTGCCGCTGCCTCCGCTGCTGCCGCAGCTGAGAAAGACGATGATGAAGATGAAGATGACAAGGATGAAAAAGAAGATCTACTAAAAAACCTGCCATAATACTGCACAATAAACTACGCAATTAACTACC

Ace file of the UniGene sp_v3.0_unigene31430

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calreticulin n=1 Tax=Mus musculus RepID=UPI00020F0570	-	-	1.0e-16	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Calreticulin	-	-	2.4e-13	-

Source	Gene names
Sma3	CRH; CRT; CRT1; Crt1; Gm crt-1; LOC_Os03g61670; LOC_Os07g14270; OJ1058_C08.34-1; OJ1058_C08.34-2; OSJNBa0003K21.18-1; OSJNBa0003K21.18-2; OSJNBa0078D06.28; Os03g0832200; Os07g0246200; OsI_14188; OsI_25508; OsJ_13241; OsJ_23697;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56340.1	CRT1, CRT1a, AtCRT1a calreticulin 1a chr1:21090059-21092630 REVERSE LENGTH=425	2.0e-19	57%
RefSeq	Arabidopsis thaliana	NP_001031199.1	calreticulin-1 [Arabidopsis thaliana]	3.0e-19	57%
RefSeq	Populus trichocarpa	XP_002325909.1	predicted protein [Populus trichocarpa]	8.0e-18	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP55

Fln msg: your sequence is shorter than subject: 113 - 401

Fln protein: LYKGEWTHPQIDNPAYKPDASLYAFDSFKYLGIEVWQVKSGSVFGNFLITDEPAVAKKAATEILKRVPGEKAAEKAEQDAAAAASAAAAAEKDDDEDEDDKDEKEDLLKNLP*

Protein Length: 114

Fln nts: CATTGTACAAAGGTGAATGGACCCACCCCCAAATTGACAACCCTGCCTACAAACCTGATGCATCTTTGTATGCTTTCGATTCCTTCAAATACCTCGGTATTGAAGTCTGGCAAGTGAAATCCGGTTCCGTCTTCGGAAACTTTTTGATCACCGACGAACCTGCAGTTGCCAAAAAGGCAGCCACCGAAATCTTGAAGCGAGTCCCTGGTGAGAAGGCCGCTGAAAAGGCTGAACAAGATGCCGCTGCCGCTGCCTCCGCTGCTGCCGCAGCTGAGAAAGACGATGATGAAGATGAAGATGACAAGGATGAAAAAGAAGATCTACTAAAAAACCTGCCATAA___TACTGCACAATAAACTACGCAATTAACTACC

Fln Alignment:

Contig31430___YKGEWTHPQIDNPAYKPDASLYAFDSFKYLGIEVWQVKSGSVFGNFLITDEPAVAKKAATE
B8LP55_______________YKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVSDDPEYAKKVAEE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
319	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain