SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31399

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31399 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L23 n=3 Tax=Oomycetes RepID=D0MUG8_PHYIT	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	60S ribosomal protein L23	-	-	1.151e-10	-

Source	Gene names
Sma3	At1g04480; CHLREDRAFT_159282; F19P19.5; GSVIVT00020335001; GSVIVT00028518001; LOC_Os03g04590; LOC_Os10g32920; MICPUCDRAFT_37554; MICPUN_90970; OJ1293_E04.23; OSJNBa0006L06.7; OSTLU_18267; Os02g0814700; Os03g0139100; Os10g0466700; OsI_09417; OsI_09939; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04400.1	emb2171 Ribosomal protein L14p/L23e family protein chr3:1167339-1168308 FORWARD LENGTH=140	75%
RefSeq	Arabidopsis thaliana	NP_563707.1	60S ribosomal protein L23 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002335793.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
126	14		85		0.993533
132	85		14		0.993533
162	14		85		0.993533
174	14		85		0.993533
200	14	85			0.993533
231	14		85		0.993533
234	14		85		0.993533
243	85	14			0.993533
282	16		83		0.994512
291	83		16		0.994512
294	83		16		0.994512
300	16		83		0.994512
318	16	83			0.994512
327	83		16		0.994512
332	16		83		0.994512
339		83		16	0.994512
351	16		83		0.994512
357	33		66		1.0
417	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain