SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31265

Length: 509 nt

UniGene Fasta

>sp_v3.0_unigene31265
AGGCCAAGGTCGGTGATTGCGGTAAAATGGCCAGAGCTTCTGGTGACTATGCCGTTATCGTGTCACAAGATGCTGATAAGGGAATCTCCAGAATTAGACTTCCTTCTGGTTCAAAGAAGACCATCTCCAATAACTGCAGAGCCATGATTGGTTTGATTGCTGGTGGTGGACGTACTGACAAGCCCATCTTGAAGGCTGGTCGTGCTTTCCACAAGTACAGAGTGAAGAGAAACGAGTGGCCCAAGGTTAGAGGTGTGGCCATGAACCCTGTTGATCACCCTCACGGTGGTGGTAACCAACAGCACATGGGTAAGCCTGGTACTGTTAGACGTGACAGATGTGCTGGTTCCAAGACTGGTCAAATTGCTGCTCGTAGAACTGGTCGTGTTAGAGGTTCATTGCGCACTGATGAGGTATAAACGCAGTAACTAGTGAGTAATGAATGATGACTGACTGTTATTGAGTGACCAAAAGTGCCTTGTCTAATATGTACATCCCGTTGAACAAAT

Ace file of the UniGene sp_v3.0_unigene31265

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L8, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N4E3_PHYIT	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	60S ribosomal protein L8	-	-	1.701e-08	-

Source	Gene names
Sma3	At3g51190; At4g36130; EMB2296; F23E13.20; F24M12.230; GSVIVT00026101001; GSVIVT00027466001; GSVIVT00036802001; LOC_Os12g38000; MICPUCDRAFT_49650; MICPUN_95460; OSTLU_31116; Os12g0567700; OsI_38771; OsJ_36548; Ot04g01970; PHATR_28234; PHYPADRAFT_161945; PH

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L2	IPR002171	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Ribosomal protein S19A/S15e	IPR005713	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	Ribosomal protein L2, domain 3	IPR014726	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18020.1	EMB2296 Ribosomal protein L2 family chr2:7837151-7838160 FORWARD LENGTH=258	68%
RefSeq	Arabidopsis thaliana	NP_179393.1	60S ribosomal protein L8-1 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002327761.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT38

Fln msg: your sequence is shorter than subject: 139 - 261

Fln protein: AKVGDCGKMARASGDYAVIVSQDADKGISRIRLPSGSKKTISNNCRAMIGLIAGGGRTDKPILKAGRAFHKYRVKRNEWPKVRGVAMNPVDHPHGGGNQQHMGKPGTVRRDRCAGSKTGQIAARRTGRVRGSLRTDEV*

Protein Length: 140

Fln nts: AGGCCAAGGTCGGTGATTGCGGTAAAATGGCCAGAGCTTCTGGTGACTATGCCGTTATCGTGTCACAAGATGCTGATAAGGGAATCTCCAGAATTAGACTTCCTTCTGGTTCAAAGAAGACCATCTCCAATAACTGCAGAGCCATGATTGGTTTGATTGCTGGTGGTGGACGTACTGACAAGCCCATCTTGAAGGCTGGTCGTGCTTTCCACAAGTACAGAGTGAAGAGAAACGAGTGGCCCAAGGTTAGAGGTGTGGCCATGAACCCTGTTGATCACCCTCACGGTGGTGGTAACCAACAGCACATGGGTAAGCCTGGTACTGTTAGACGTGACAGATGTGCTGGTTCCAAGACTGGTCAAATTGCTGCTCGTAGAACTGGTCGTGTTAGAGGTTCATTGCGCACTGATGAGGTATAA___ACGCAGTAACTAGTGAGTAATGAATGATGACTGACTGTTATTGAGTGACCAAAAGTGCCTTGTCTAATATGTACATCCCGTTGAACAAAT

Fln Alignment:

Contig31265___VGDCGKMARASGDYAVIVSQDADKGISRIRLPSGSKKTISNNCRAMIGLIAGGGRTDKPILKAGRAFHKYRVKRNEWPKVRGVAMNPVDHPHGGGNQQHMGKPGTVRRDRCAGSKTGQIAARRTGRVRGSLRT
C0PT38_______________VGDRGSFARASGDYAIVVSHNFDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain