SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31264

Length: 1537 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31264 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAE_3-kCoA_syn1 multi-domain protein	-	-	0.0	68%
FL-Next	sp=Ureide permease 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	Ureide permease, putative	-	-	7.067e-09	-

Source	Gene names
Sma3	A3; AT1G26440; At1g26440; At2g03520; At2g03530; At2g03590; At2g03600; F19B11.5; GSVIVT00030043001; LOC_Os12g31850; LOC_Os12g31860; LOC_Os12g31890; Os12g0502800; Os12g0503000; Os12g0503300; OsI_38430; OsI_38433; OsI_38434; OsI_38436; OsJ_36199; OsJ_36200;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	allantoin uptake transmembrane transporter activity	GO:0005274	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	uracil transmembrane transporter activity	GO:0015210	Molecular Function	-
Sma3	xanthine transmembrane transporter activity	GO:0042907	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	allantoin transport	GO:0015720	Biological Process	-
Sma3	uracil transport	GO:0015857	Biological Process	-
Sma3	xanthine transport	GO:0042906	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Shikimate kinase	IPR000623	-	-
Sma3	Phosphoserine phosphatase SerB	IPR004469	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IB, PSPase-like	IPR006383	-	-
Sma3	Ureide permease	IPR009834	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03530.1	UPS2, ATUPS2 ureide permease 2 chr2:1071951-1073522 FORWARD LENGTH=398	68%
RefSeq	Arabidopsis thaliana	NP_001077874.1	ureide permease 2 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002311338.1	predicted protein, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9ZQ89

Fln msg: your sequence is shorter than subject: 340 - 398

Fln protein: QLSQDNGPSIGFAMVGGLVLSLGNLATQYAWAFVGLSVTEVVSSSITVVVGTTMNYFLDDRINRAEILFPGVGCFLIAVCLGAVVHASNAADNEAKLESLPSDYKMMQNVSRDQNLKNQSDGSTLDEEIGENNHSEPSVQFNTVKIGSAEFLREVENRRSIKVAGSNTYFGLGIVFFAGICFSLFSPAFNLATNDQWHTLKSGVPHLVVYTAFFYFSVCCFVVAIILNITFLYRPILGLPKSSFTAYLKDWRGRQWALLAGFLCGFGNGFQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRRSSRRTYLSLAGMLFMFVVAVGVLMGSSGKRKTT*

Protein Length: 341

Fln nts: CTCAGCTTAGCCAGGATAATGGCCCATCTATTGGTTTTGCAATGGTAGGGGGATTAGTATTGAGCCTTGGAAATTTGGCAACACAGTATGCCTGGGCCTTTGTTGGGCTTTCTGTGACAGAGGTGGTCTCTTCAAGCATAACTGTGGTTGTTGGTACAACAATGAACTATTTTTTAGATGATCGTATCAACAGAGCTGAAATTCTTTTTCCTGGCGTAGGATGTTTTTTGATTGCAGTTTGCTTAGGCGCTGTTGTGCATGCTTCAAATGCAGCTGACAATGAGGCAAAGCTAGAAAGCTTACCTTCCGACTACAAGATGATGCAAAATGTGAGTCGTGATCAGAACCTAAAGAATCAATCCGATGGTAGCACCCTTGACGAGGAGATAGGGGAAAATAACCATTCAGAACCTTCAGTTCAATTCAACACGGTCAAAATTGGAAGCGCAGAATTCTTGAGAGAGGTTGAAAATAGAAGATCCATTAAGGTTGCTGGGTCAAATACATATTTTGGACTTGGGATAGTATTCTTTGCAGGGATTTGCTTCTCACTTTTTTCACCTGCTTTCAACTTGGCTACAAATGACCAATGGCACACATTGAAATCAGGAGTGCCACACCTGGTTGTTTACACAGCTTTCTTCTACTTCTCAGTTTGTTGTTTTGTAGTTGCAATCATCCTTAACATTACATTCCTATATCGTCCAATACTAGGATTGCCCAAGTCTTCCTTCACTGCTTATTTGAAAGATTGGCGTGGTCGTCAATGGGCCCTGCTGGCTGGATTTTTATGTGGATTTGGAAATGGTTTTCAGTTCATGGGGGGTCAAGCAGCAGGGTATGCAGCTGCAGATGCTGTTCAGGCGTTGCCCCTTGTGAGCACATTTTGGGGAATATTGCTTTTTGGAGAATATCGGCGTTCATCTCGAAGAACTTATTTGTCGTTGGCAGGCATGTTGTTTATGTTCGTTGTAGCTGTGGGTGTCCTCATGGGCTCATCTGGAAAAAGGAAAACCACTTAA___CTACTGGAACACATGCAGTGTATTTTGTGGTTCCCTCTCTTCATTTGAGGTTGATTCAGTTCACCTTAGGTTACTTCAGACTTTAAGGTGACCCCTTGATTGCATTGCAAAGTAAAACTCATCTATTTGTATCCATGATTTACGTTGTACAGATATTTAGTAAAGGAAGACAAAAGTTTTAATGTGGAAGCAATTTCTTAAATTATGATTAAGACTCGTTCATGGATCTTACCGGTTGGGAGGTTCAGTTAGGGTTAGGCTCCTAGGTCTTGTTTGGGCTGTGGCTACAATAGTTTAATTCCATTTATTGTTCCCTTATAAATGCAAGATGGTTAATAATCTGACTTGCAACTGGGGAAGAATATATACACGTAACGTGATGGACAGAAATTCCAGAGACCAACAACAGTTCCTCGTTATGATTTCTTTCTTCTTGTTTTTCATGCTGACATCACATCATATTTATTGTAATTTTCAAATCTGGTTGAAAACAGTTCCTCGTTATGATTTACTTT

Fln Alignment:

Contig31264___QLSQDNGPSIGFAMVGGLVLSLGNLATQYAWAFVGLXXXXXXXXXXXXXXXXTMNYFLDDRINRAEILFPGVGCFLIAVCLGAVVHASNAADNEAKLESLPSDYKMMQNVSRDQNLKNQSDGSTLDEEIGENNHSEPSVQFNTV-KIGSAEFLREVENRRSIKVAGSNTYFGLGIVFFAGICFSLFSPAFNLATNDQWHTLKSGVPHLVVYTAFFYFSVCCFVVAIILNITFLYRPILGLPKSSFTAYLKDWRGRQWALLAGFLCXXXXXXXXXXXXXXXXXXXXXXXALPLVSTFWGILLFGEYXXXXXRTYLSLAGMLFMFVVAVGVLMGSSGKRK
Q9ZQ89_______________QLAQDNWPSVMFAMAGGIVLSLGNLSTQYAWALVGLSVTEVITSSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLRDF-------------ETAKQEASGPST--EIGTNSSKDLETNVTTKPKEGTARFLIELENTRAIKVFGKRKIIGLAITFFAGLCFSLFSPAFNLATNDQWNRLKQGVPKLVVYTAFFYFSVSCFIIALILNVVFLYYPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGVVLFGEYRRSSRKTYLLLFCMLFMFISAVAVLMASSGHRK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
489	57		42		1.0
605	85	14			0.993533
1111		66		33	0.997452
1184		25		75	0.996473
1446	20		80		0.995493
1448	20	80			0.995493
1449		80		20	0.995493
1450	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain