SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31255

Length: 1087 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31255 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate dehydrogenase n=4 Tax=Pinaceae RepID=D9IXC9_PINPS	-	-	0.0	75%
FL-Next	sp=Glutamate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	0.0	75%
Sma3	Glutamate dehydrogenase	-	-	1.957e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutamate dehydrogenase.	EC:1.4.1.2	-	9.449e-30	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250		9.449e-30	%
Sma3	Arginine and proline metabolism	00330		9.449e-30	%
Sma3	Nitrogen metabolism	00910		9.449e-30	%
Sma3	Metabolic pathways	01100		9.449e-30	%
Sma3	Glutamate dehydrogenase (NAD(P)(+)).	EC:1.4.1.3	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Arginine and proline metabolism	00330	%
Sma3	D-Glutamine and D-glutamate metabolism	00471	%
Sma3	Nitrogen metabolism	00910	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT5G07440; At3g03910; At5g07440; At5g18170; B1164G11.4; BoGDH; CHLREDRAFT_82916; F20H23.4; GDH; GDH1; GDH2; GDH3; GDHA; GDHB; GSH3; GSVIVT00012846001; GSVIVT00014097001; GSVIVT00014101001; GSVIVT00014104001; GSVIVT00025474001; LsGDH; MRG7.13; OSJNBb0012J1

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	glutamate dehydrogenase (NAD+) activity	GO:0004352	Molecular Function	-
Sma3	glutamate dehydrogenase [NAD(P)+] activity	GO:0004353	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	GO:0016639	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	regulation of nitrogen compound metabolic process	GO:0051171	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal	IPR006096	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain	IPR006097	-	-
Sma3	Glutamate dehydrogenase	IPR014362	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18170.1	GDH1 glutamate dehydrogenase 1 chr5:6006172-6008248 FORWARD LENGTH=411	73%
RefSeq	Arabidopsis thaliana	NP_197318.1	glutamate dehydrogenase 1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002339508.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D9IXC9

Fln msg: your sequence is shorter than subject: 257 - 411

Fln protein: EYSKFHGHSPAVVTGKPLDLGGSLGRDAATGRGVVIATEALLAEHGIPIRDQRFVIQGFGNVGSWAAKLIHEKGGKVVAISDITGALKNTSGLDIPSIIRYSKENGNIKDFTEAEAIDPECLLHEECDVLIPAALGGVLNRENASELRAKFIVEAANHPTDPEADEILSKKGVVILPDIYANAGGVIVSYFEWVQNIQGFRWDEPQINNELWTYMMRAFTDIKDMCKKLDCDLRMGAFSLGLERVARATNLRGWEV*

Protein Length: 258

Fln nts: ATGAATATTCCAAGTTTCACGGTCATTCTCCTGCAGTTGTTACTGGAAAACCTCTTGATCTTGGTGGTTCCCTTGGTAGGGATGCTGCAACTGGCAGAGGTGTGGTAATTGCCACAGAAGCCTTGTTAGCTGAACATGGAATTCCCATTCGAGATCAACGCTTTGTCATCCAGGGTTTTGGAAACGTGGGTTCTTGGGCAGCAAAACTCATCCATGAGAAAGGTGGAAAAGTCGTGGCTATAAGTGATATCACAGGTGCATTAAAGAACACCAGTGGTCTTGATATTCCTAGCATAATAAGATATTCAAAGGAAAATGGTAATATTAAGGACTTCACAGAAGCAGAGGCGATTGACCCAGAATGCTTGTTACATGAAGAATGTGATGTACTAATTCCAGCTGCTCTGGGAGGTGTTCTTAACAGGGAAAATGCTAGTGAATTGAGAGCTAAATTCATAGTTGAAGCAGCAAATCATCCCACAGATCCAGAGGCTGATGAGATTTTATCAAAGAAAGGAGTTGTTATACTGCCAGACATATATGCAAATGCTGGCGGTGTAATTGTCAGCTATTTTGAGTGGGTTCAGAATATCCAAGGTTTTAGGTGGGATGAACCTCAAATTAATAACGAACTATGGACATATATGATGAGGGCTTTCACAGACATCAAGGATATGTGTAAAAAACTTGATTGTGATCTACGAATGGGGGCATTCTCACTTGGACTGGAACGTGTGGCTCGTGCAACCAACTTAAGAGGTTGGGAGGTATAA___ATATTACTCTTCAGAAGTTGATGGAGAGTGTGGAGACCCTTTGTCAAAGGGTGCATGCTTTTGAGTTCCTGACAGCAGTCCTTTGGGGAATGCATTTCCTTCATTCATTTGATAGTTGATGCTGTTGAGTTCATAAGGGTGGTTGGCACTGTAATAATAGAACTTATTTCTTTATTCATTTAAATATGATGTCAAGAATTCAGGACTGGCTGCCATTCTAGTGCAGAAAAATTTCCCTCTATTTATATCAATTTCAAGCAATTGAGTATGGATGACTGGTTGCCACTGTAGCGGGGAATTTATTTATTTCACTC

Fln Alignment:

Contig31255___EYSKFHGHSPAVVTGKPLDLGGSLGRDAATGRGVVIATEALLAEHGIPIRDQRFVIQGFGNVGSWAAKLIHEKGGKVVAISDITGALKNTSGLDIPSIIRYSKENGNIKDFTEAEAIDPECLLHEECDVLIPAALGGVLNRENASELRAKFIVEAANHPTDPEADEILSKKGVVILPDIYANAGGVIVSYFEWVQNIQGFRWDEPQINNELWTYMMRAFTDIKDMCKKLDCDLRMGAFSLGLERVARATNLRGWE
D9IXC9_______________EYSKFHGYSPAIVTGKPVDLGGSLGRDAATGRGVMFATEALLAEYGKSISGQRFVIQGFGNVGSWAAELIHEKGGKIIAVSDISGAVKNSNGLDIPALMKHTKTNGVVKGFEAADSIDPKTLLLEDCDVLIPAALGGVLNRENASEVKAKFIIEAANHPTDPEADEILYKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWDEQKVNTELKNYMTSAFQHLKEMCKTHDCDLRMGAFTLGVNRVARATLLRGWE

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
539		83		16	0.994512
540	83		16		0.994512
541	16			83	0.994512
542			16	83	0.994512
547			16	83	0.994512
548	83	16			0.994512
549		16		83	0.994512
551	16			83	0.994512
555	16			83	0.994512
556		16	83		0.994512
558	16	83			0.994512
559	80	20			0.995493
575		25		75	0.996473
687		88		11	0.923564
757	11		88		0.923564
826		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain