SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31134

Length: 920 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31134 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RQP0_PHYPA	-	-	1.96182e-44	53%
FL-Next	sp=Nematode resistance protein-like HSPRO2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	Putative nematode-resistance protein	-	-	1.116e-08	-

Source	Gene names
Sma3	At2g40000; GSVIVT00029253001; Hs1; Hs1pro-1; OJ1402_H07.8; Os01g0855600; OsI_04482; OsJ_04117; PHYPADRAFT_117986; PHYPADRAFT_201460; PHYPADRAFT_23455; PHYPADRAFT_32180; PHYPADRAFT_32383; PHYPADRAFT_43410; POPTRDRAFT_1084581; POPTRDRAFT_833774; RCOM_059230

Source	GOs	Term	Type	Identity
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Hs1pro-1, C-terminal	IPR009743	-	-
Sma3	Hs1pro-1, N-terminal	IPR009869	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40000.1	HSPRO2, ATHSPRO2 ortholog of sugar beet HS1 PRO-1 2 chr2:16700649-16701956 REVERSE LENGTH=435	4.0e-31	50%
RefSeq	Arabidopsis thaliana	NP_181529.1	HS1 PRO-1 2-like protein [Arabidopsis thaliana]	5.0e-31	50%
RefSeq	Populus trichocarpa	XP_002315166.1	predicted protein [Populus trichocarpa]	1.0e-34	50%

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
132	80		20		0.995493
149		16		83	0.994512
186		50	50		1.0
315	12		87		0.992554
386	87		12		0.992554
405		14		85	0.993533
427		16		83	0.994512
432	83			16	0.994512
594			11	88	0.999952
639	77			22	0.999999
640		77	22		0.999999
641	22	77			0.999999
642			22	77	0.999999
644			22	77	0.999999
645	22			77	0.999999
651	22		77		0.999999
652	22	77			0.999999
655		77		11	0.968132
656		11		77	0.968132
657	11			88	0.923564
659			22	77	0.999999
662		11		88	0.923564
663	11		88		0.923564
665	12	87			0.992554
717	16	83			0.994512
718		16		83	0.994512
720			16	83	0.994512
721		16	83		0.994512
722		16		83	0.994512
723	16		83		0.994512
727		16	83		0.994512
729	83	16			0.994512
731	16			83	0.994512
733		83	16		0.994512
746		80		20	0.995493
747	80		20		0.995493
749	80		20		0.995493
757		20		80	0.995493
763		80		20	0.995493
765	20			80	0.995493
767		75	25		0.996473
768	25			75	0.996473
769		25	75		0.996473
809	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain