SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31113

Length: 1302 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31113 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9SME7_RICCO	-	-	3.0e-38	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Calmodulin, putative	-	-	3.843e-09	-

Source	Gene names
Sma3	At1g05990; At3g07490; At3g59440; At4g03290; At4g12860; CML17; CML2; CML22; CML28; CML3; CML30; CML4; CML6; CML7; F21O3.20; F25L23.300; F4C21.22; GSVIVT00001946001; GSVIVT00013306001; H0425E08.6; H0522A01.1; H9-7; LOC_Os02g39380; LOC_Os04g41540; LOC_Os06g0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07490.1	AGD11 ARF-GAP domain 11 chr3:2391189-2391650 FORWARD LENGTH=153	54%
RefSeq	Arabidopsis thaliana	NP_187405.1	calmodulin-like protein 3 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002301768.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN2

Fln msg:

Fln protein: MAENLDEGVSEKAVGREDLRRVFSTFDKNGDGLISEQEMRESFDNLRLCVGEEELASTIRTVDVNGDGYVDFEEFVLMYESISGKRGEEEKADHEDADLAEAFGVFDENGDGLITVEELQSVLKSLGLQEGRAFGECKKMIQKVDKDGDGMVNYMEFKEMMSAGFGRN*

Protein Length: 170

Fln nts: ATGGGGACTCCGCCGAAGGATCTCTGGAATGTGGCGTGTCGAAGATTCTCTCTAGGCCGCCGTATTTTTAAATCATGGCGCTGGCGTCTGAGAGCAGGGCTTTTCTGACAAGCGAATTTTAAAGTTATGTTGCGTGCGGTAGTTTGTTTGTCACAGGCGTACTCCGCAATACCATATATTAACTGTGTTTCGATAGGTTTTCTGGATGCAGATTCAAGTGAAGAAATTATAGGATTTGTGAAATTTTCAGTGGATATCGGGAGAGTGAGGTTGAATCTGAGAACCCATTTTCTGTAAGGCCGTTATTCAGTCTTTTGTTCTGCAGGAAGTTCAAGCTCTGGTTCGATTTCACGCTCTCTGAAAAGGGTCTAACA_-_ATGGCGGAAAACTTAGACGAAGGGGTGTCGGAGAAGGCCGTGGGGCGAGAGGATCTGAGGAGGGTTTTCTCGACCTTCGACAAGAACGGCGACGGGCTGATCAGCGAACAGGAGATGAGAGAGTCCTTCGATAACCTCAGGCTGTGCGTAGGCGAAGAGGAATTGGCCTCCACGATTCGAACCGTGGACGTCAATGGCGATGGGTACGTGGATTTTGAGGAGTTCGTTTTGATGTATGAATCGATTAGTGGTAAGCGAGGGGAAGAAGAAAAGGCGGATCATGAAGACGCGGATCTAGCGGAGGCGTTCGGCGTTTTCGACGAGAATGGCGACGGTTTGATAACGGTGGAAGAGCTCCAGTCTGTGCTCAAGTCGCTGGGTCTCCAGGAAGGCCGAGCGTTTGGGGAGTGCAAGAAGATGATACAGAAAGTTGATAAAGATGGTGACGGTATGGTCAATTATATGGAGTTTAAGGAGATGATGAGCGCTGGATTTGGGAGAAATTAA___TTTCGGAATTTTAGAGGTGGCGTGTGTAGAGATTTCGGTTTAATCGGTTGGTGTATTCTTTCCTGTATATATCCAGGTGCTCAAAAATGTATTTTCACTGTGTATATACAGTTACCCACATGTGTATTCTTTCCTTCTCAAACGGCTACGTTCACTGCTATTTTGCTAGAGCTTTGAAGCAGATCTTTGATGGTCACTCAGATCTGAACCAGTTGATCTCCATCCCAAACATTTGTTAAACACCCAGCCTCTGATGGCCGGCCTGGCTGGCTTCCTTCTTTCTCCCTGTATGTTCCAAAGTGTAACAGCCTTTCCAAACTTTGACCTATTTGTGGCCATGGAATTGGTAAAGGATATGTGAATCTGTGAATTATGAATTCAACCAGAGTTATGATAAGTCTTCAGCGTTTTGTAGCCATAG

Fln Alignment:

Contig31113___SEKGLTMAENLDEGVSEKAVGREDLRRVFSTFDKNGDGLISEQEMRESFDNLRLCVGEEELASTIRTVDVNGDGYVDFEEFVLMYESISGKRGE--EEKADHEDADLAEAFGVFDENGDGLITVEELQSVLKSLGLQEGRAFGECKKMIQKVDKDGDGMVNYMEFKEMMSA
B8LKN2_______________SEKALTMADNSAEGVSNNAVGRDELRRVFAIFDKNGDGLISKQEMRESFDKLRLCIGEEELASTIRTVDVNGDGYVDFDEFVTLYESMSGKRGEGGDAKAEHEDADLAEAFGVFDENGDGLITVEELQSVLKSLCFEEGRTIGDCKKMIQKVDKDGDGMVNYMEFKEMMSA

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
373	25	75			0.996473
486	66		33		1.0
525	33	66			0.997452
570		66	33		0.997452
571	33			66	0.997452
572			66	33	0.997452
575			66	33	0.997452
577			33	66	0.997452
578		66		33	0.997452
579	33			66	0.997452
580			33	66	0.997452
581	33	66			0.997452
582		66	33		0.997452
585	33	66			0.997452
587			33	66	0.997452
592	66			33	0.997452
595		66	33		0.997452
597		33	66		0.997452
699		90	10		0.90298
1101	66	33			1.0
1102		33	66		1.0
1103	83	16			0.994512
1104	83			16	0.994512
1105	80			20	0.995493
1223	16		83		0.994512
1224	16	83			0.994512
1226	16	83			0.994512
1227	16	83			0.994512
1229	16			83	0.994512
1230		16	83		0.994512
1231	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain