SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31111

Length: 1648 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene31111 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: ripening-related protein-like [Vitis vinifera] emb\|CAB85628.1\| putative ripening-related protein [Vitis vinifera]	-	-	2.0e-35	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Haloacid dehalogenase-like hydrolase family protein, putative, expressed	-	-	2.515e-07	-

Source	Gene names
Sma3	At5g02230; At5g59480; F21F14.210; GSVIVT00019963001; GSVIVT00021335001; GSVIVT00024290001; GSVIVT00028217001; LOC_Os03g16670; LOC_Os03g49440; Os03g0273800; Os03g0701200; OsI_10939; OsI_13169; OsJ_10314; OsJ_12245; POPTRDRAFT_644719; POPTRDRAFT_658536; POP

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase/epoxide hydrolase	IPR005833	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302699.1	predicted protein, partial [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Q9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 227 - 335

Fln protein: IIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPPQQIVDNSNSLKAVNPITQTTGNEDDLETWFEALNSSEQIVDDTNSLKTVNPCTQTTGNEEDLETGITSHGKADYSDFLETINSDNSTDFKSPILCKPSLEAIELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVIVGRSDRTEGADFALESIHNIKEAIPEIWENEEKSEIEVCPCSGITVETVVVA*

Protein Length: 228

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTAGAGTTGAGACGATTCTAGATAGGCTGCCTCCGGAACATAGCCGGACCTCCAAACTACCCGAGATATTTCGATCCTTCGCTGATAACATGTAGAAAATTGCATCGTCAGCGGTTCCTGTGGCGATAAACCAGCGTTTTGACCTTTGTGGTTATATTCACTTATGGTCGGAGTTTTGATTTCTGAAGATTACATCCATAGCTTTTCAAGTGACAGTCGTCAGCTCCTTCGAAGAGCTTTAAAGACGTCGCGTCAAATAAAATTTCCCACGGAGTTAGCAAAGCTTCATTGGCTTATAAAGGAAGTATCTCGGGAACATTATCCCTTCATTATTACACCTGGAAATGGATTCTATTTAAAATAGTCTCTGCGGACACAGCAGCCGCTTAAAGATTCAGTCATCTGAGAAATTCAGAGCGCACTCACTACTACAAATTTGAACCCAAGTTGGAAGGGATGCGGGTTTTTGATTAAGGTATTTATCGATACGGAAACCCTTGTCAACATGGTACTGGACCTGTAGAGGACACAGAGCCCGTCCAGGTACTGGGCTATGATTTTGATAATGATACATTGAATAATATTCACCAATTCTGACAAAGTTCATGCTACAAAAACCTTAAGTAGGCTGGGATTGGAAGATTGTTTTGAAGGTGTAATATGCTTTGAAACACTGAATCCCCCTCAACAAATTGTTGATAATAGTAATAGCTTGAAAGCTGTCAACCCAATTACACAAACAACCGGTAATGAAGATGACTTGGAAACCTGGTTTGAAGCACTGAATAGCTCTGAACAAATTGTTGATGATACTAATAGCTTGAAGACTGTCAACCCATGTACGCAAACTACTGGTAATGAAGAAGACTTGGAAACCGGCATTACTTCTCATGGAAAAGCTGATTATAGTGATTTCTTGGAAACCATAAATAGTGATAATTCAACAGATTTCAAGTCTCCTATTCTTTGCAAGCCTTCCTTGGAGGCAATAGAATTGGCATTGAAAATAGCAAATGCAGATCCAAAAAGGACGATTTTCTTTGACGACAGTGTACGTAACATAGCAGCGGGCAAAGCTGCAGGGTTGCATACTGTTATAGTTGGCAGATCTGACCGAACAGAAGGAGCAGATTTTGCTCTCGAAAGCATTCACAACATAAAGGAAGCCATACCTGAGATTTGGGAAAATGAAGAAAAATCTGAAATTGAAGTATGTCCATGCTCTGGAATTACCGTGGAAACTGTAGTTGTTGCATGA___AATGTATGACTTCACATTAGGATAAAATGTTTGCACTGTTAGCATATGGGGCTTTTAATTGATGGTGAATGGGTGTACTGTGAAGACACTCATTGCAAAAAAGTCATTGGTTTAAATCCCTGTGGGTAAGCCCAAAAGAAACTATTAGCACCGTAGTTTTTCTATATTTGACAACACAACTGAACCCTAGTAGCCCTGCTGTCTTTTAGGGTCCAGATTGTTACAATAACCTCGAACAATGTCTATGTTATAGAGTCCAGAGGGTTTCAAGAGCCTCTAACAATATCTATGTTATATGGTAAACATTACTATAATTTCTATTGATAATAACTATCTATCTGTTTCTAAAGTTAAGGTAGATACG

Fln Alignment:

Contig31111___IIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPPQQIVDNSNSLKAVNPITQTTGNEDDLETWFEALNSSEQIVDDTNSLKTVNPCTQTTGNEEDLETGITSHGKADYSDFLETINSDNSTDFKSPILCKPSLEAIELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVIVGRSDRTEGADFALESIHNIKEA
A9P0Q9_______________IIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPSQQIVDNSNSLKTINQYTETIGDEDDLETWFETLNHSQQIVDDSNSLKTVKPCMQATGDEDDLETIVTSLGKADYCNGLETINSDNSTNSKSAILCKPSLEAMELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVLVGSSVRTEGADFALESIHNIKEA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1315	33		66		0.997452
1341		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain