SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30964

Length: 1155 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30964

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PRE87 protein n=1 Tax=Pinus radiata RepID=O65014_PINRA	-	-	93%
FL-Next	tr=PRE87 protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	93%
Sma3	PRE87 protein	-	-	-

Source	Gene names
Sma3	PRE87;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	inositol oxygenase activity	GO:0050113	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	inositol catabolic process	GO:0019310	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14520.1	MIOX1 myo-inositol oxygenase 1 chr1:4968376-4969954 REVERSE LENGTH=311	74%
RefSeq	Arabidopsis thaliana	NP_001154337.1	inositol oxygenase 1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002311571.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65014

Fln msg:

Fln protein: MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGGEPQWAVVGDTFPLGCPFSETIVHHELFKDNPDFGNPKYNTKNGVYSEKCGLDNVLMSWGHDEYMYLVAKMNNTTLPPAALFVIRFHSFYPLHREGAYMHLLSDEDKEMLKWVRIFNKYDLYSKSKVRIDVEEVMPYYQSLIDKYFPPKLRW*

Protein Length: 219

Fln nts: AGACATATGATAACGCATTAAGTAAGCGCGAACATTATCGTAAGCTTGACAAAACTGTC_-_ATGAGCATCTGGGAATGCTGTGAACTATTAAACGAGTTCGTAGATGAGAGTGATCCTGACCTCGATGAACCTCAAATAGAACACCTCCTACAAACAGCAGAGGCTATTCGTAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTCATCCATGATCTGGGCAAGGTACTACTGCATCCTGACTTTGGAGGGGAGCCTCAATGGGCAGTTGTAGGTGACACTTTTCCTTTGGGATGCCCTTTCAGTGAAACCATTGTTCACCACGAGCTTTTCAAGGACAATCCAGATTTTGGCAACCCAAAGTACAACACCAAAAACGGGGTGTACTCTGAAAAATGTGGGCTGGACAACGTTCTTATGTCATGGGGTCACGATGAGTACATGTACCTGGTTGCTAAAATGAATAACACAACATTACCTCCTGCAGCTCTCTTCGTCATAAGATTTCACTCTTTCTACCCTCTGCATCGTGAAGGTGCGTACATGCACTTGCTGAGTGATGAAGATAAGGAGATGCTCAAGTGGGTTAGAATATTCAATAAATATGATTTATACAGCAAGAGTAAGGTCAGAATTGATGTGGAGGAAGTGATGCCATATTATCAATCACTCATTGATAAGTATTTTCCTCCCAAATTAAGATGGTGA___TTACCTCATGAATGATGAATTGGATTGGAATGGCCCTGATATTTATTATATTATTCTGTACTGAGTGGACTAGGGAATAGTTTGGTCTGCTACATGGTTATGTGTGCAGAGCCAAGTTGACATAGAACATCTAGAGTTCGGACTGATGCAAAAGAAACTAATTTGATCTGCCACATGTGATGTAATGGTGTTCGATTGTGTGGTGTCAGGCTGGCAAATAAGTTCAGTTGCCTGGTGCCAAGCTGGCAAATAAGTTTCAATTCTTCAGTCGATCTAGATTATATCTAAGGATTTCTTGAAGCACTTTCTGTTCATAGAATATTTTGTGCTTTCAAATCTGTTTATCTAGTATTTTGTGTTGTTATTTTCGTTTGCTCCGGTAATTTTCTTGTGTAATTTTGTTTAAATGACAAGGGTAGAAAAATTCGAATGCTTATGAAAT

Fln Alignment:

Contig30964___MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGGEPQWAVVGDTFPLGCPFSETIVHHELFKDNPDFGNPKYNTKNGVYSEKCGLDNVLMSWGHDEYMYLVAKMNNTTLPPAALFVIRFHSFYPLHREGAYMHLLSDEDKEMLKWVRIFNKYDLYSKSKVRIDVEEVMPYYQSLIDKYFPPKLRW
O65014_______________MSIWESCELLNEFVDESDPDLDEPQIEHLIQTAEAIRKDYPNEEWLHLTGLIHDLGKVLLHPDFGSEPQWAVVGDTFPLGCAFSETIVHHEFFKDNPDFHNPKYNTKYGVYSEKCGLDNVLMSWGHDEYMYLVAKMNNTTLPPAALFIIRFHSFYPLHREGAYMHLLNDEDKEMLEWLKIFNKYDLYSKSKVRIDVEEVKPYYQSLIDKYFPPKLRW

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
407	14		85		0.993533
526		90	10		0.90298
528	10	90			0.90298
529	10			90	0.90298
531		70		30	1.0
562	33		66		1.0
595	25		75		0.996473
652	90	10			0.90298
654		10	90		0.90298
656		10	90		0.90298
658	10			90	0.90298
674	90		10		0.90298
748		25		75	0.996473
754	25			75	0.996473
769		75	25		0.996473
883			53	46	1.0
884	46	53			1.0
927			58	41	1.0
955		41	58		1.0
1009		17		82	1.0
1072		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain