SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30947

Length: 878 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30947 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine-type peptidase, putative n=1 Tax=Ricinus communis RepID=B9T2T7_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	0.0	-
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50670.1	OTU-like cysteine protease family protein chr1:18775086-18776552 REVERSE LENGTH=208	76%
RefSeq	Arabidopsis thaliana	NP_175482.1	ubiquitin thioesterase OTU1 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002300474.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
553	85	14			0.993533
555			85	14	0.993533
556		85		14	0.993533
683	87	12			0.992554
685	12			87	0.992554
744	25			75	0.996473
770	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain