SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30932

Length: 825 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30932 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	0.0	92%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	0.0	50%
Sma3	Heat shock protein 90	-	-	4.936e-38	-

Source	Gene names
Sma3	At5g52640; At5g56000; At5g56010; At5g56030; CHLREDRAFT_138117; GSVIVT00002550001; GSVIVT00004280001; GSVIVT00033436001; HSC80; HSP81-1; HSP81-2; HSP81-3; HSP81.2; HSP82; HSP83; HSP83A; HSP90; HSP90-1; HSP90-2; HSP90A; Hsp90; LOC_Os09g30438; MDA7.5; MDA7.7

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	protein stabilization	GO:0050821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52640.1	HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 heat shock protein 90.1 chr5:21352542-21355147 FORWARD LENGTH=705	92%
RefSeq	Arabidopsis thaliana	NP_200076.1	heat shock protein 81-1 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002327494.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 274 - 834

Fln protein: GHEWSLVNKQKPIWMRKPEEITKEEYASFYKSLTNDWEEHLAVKHFFVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKENYAKFYEAFSKNLKLGIHEDSQNRAKLAELLRYHSTKSGDEMTSLKDYVTRMKEGQKEIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEETEEE

Protein Length: 275

Fln nts: ATGGGCATGAATGGAGTCTGGTGAACAAGCAGAAGCCCATTTGGATGAGGAAGCCAGAGGAGATTACTAAGGAGGAATATGCGTCCTTCTACAAGAGTCTCACTAATGACTGGGAGGAACACTTGGCCGTGAAGCATTTCTTTGTGGAGGGTCAGTTGGAATTCAAGGCTATTCTCTTTGTTCCCAAAAGGGCTCCGTTCGATCTGTTTGACACCAGGAAGAAGCTCAACAACATTAAGCTGTATGTGAGAAGGGTTTTCATAATGGACAACTGTGAAGAACTTATTCCCGAATACCTGGGTTTTGTGAAAGGTGTGGTGGACTCTGATGATCTGCCCCTCAATATCTCTAGGGAAATGTTGCAGCAGAACAAGATTCTGAAGGTAATTAGGAAGAATTTGGTAAAGAAGTGTATTGAAATGTTCAACGAGATTGCCGAGAACAAAGAGAACTATGCCAAGTTCTATGAGGCCTTTTCGAAGAACTTGAAATTGGGAATACATGAGGACAGCCAGAACAGGGCCAAGCTCGCGGAATTGTTGAGATATCACTCGACAAAGAGCGGAGATGAGATGACGAGCCTCAAGGACTATGTGACCCGAATGAAAGAAGGACAGAAGGAGATCTACTACATCACCGGCGAGAGCAAGAAGGCGGTGGAGAATTCTCCTTTCTTGGAGAGACTGAAGAGGAAGGGTTATGAGGTCCTGTTCATGGTGGATGCCATTGATGAGTACGCCGTAGGTCAGCTCAAGGAGTACGACGGGAAGAAGCTTGTTTCTGCCACAAAAGAAGGGCTGAAGCTGGAGGAGACAGAGGAGGAAG

Fln Alignment:

Contig30932___HEWSLVNKQKPIWMRKPEEITKEEYASFYKSLTNDWEEH--LAVKHFFVEGQLEFKAILFVPKRAPFDLFDTRKKLN-NIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAEN-----------------------KENYAKFYEAFSKNLKLGIHEDSQNRAKLAELLRYHSTKSGDEMTSLKDYVTRMKEGQKEIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAVGQLKEYDGKK
A7YAU9_______________YEWELLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFEEFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
197	33		66		0.997452
212		33		66	0.997452
257	66		33		0.997452
298	20		80		0.995493
338		75		25	0.996473
622		10	90		0.90298
626		11	88		0.923564
627	88	11			0.923564
629		88		11	0.923564
632	87			12	0.992554
638		14		85	0.993533
665		20		80	0.995493
683	80	20			0.995493
684		20	20		0.99255
685	20	20	60		0.99255
687	20		20		0.99255
688	80			20	0.995493
699	25		75		0.996473
708			25	75	0.996473
717	25		75		0.996473
723	75		25		0.996473
738	25		75		0.996473
741	25		75		0.996473
753		66		33	0.997452
759	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain