SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30834

Length: 577 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30834 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-40S ribosomal protein S27a n=60 Tax=Eumetazoa RepID=RS27A_DROME	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	40S ribosomal protein S27a	-	-	2.021e-06	-

Source	Gene names
Sma3	AT5G03240; At2g36170; At4g02890; At4g05050; At4g05320; At5g20620; B1472F02.6; CHLREDRAFT_142065; CHLREDRAFT_195594; EgUbi; FUBI1; GSVIVT00006610001; GSVIVT00027151001; GSVIVT00028185001; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23410.1	Ribosomal protein S27a / Ubiquitin family protein chr1:8314940-8315410 FORWARD LENGTH=156	74%
RefSeq	Arabidopsis thaliana	NP_173755.1	40S ribosomal protein S27a-1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002297752.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
6		33		66	0.997452
66		71		28	1.0
94	71		28		1.0
102	28		71		1.0
118		28		71	1.0
148		28		71	1.0
157		71	28		1.0
159	71	28			1.0
166	57		42		1.0
268	28		71		1.0
328	80			20	0.999996
567	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain