SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30812

Length: 2494 nt

UniGene Fasta

>sp_v3.0_unigene30812
AGACAGAAATTAGACACTCAATTCTCTCGCTATGGCCGCCCATAGATGCAAAAATCAAATCCCAGATACAGTATAAGAATGTGAATTCAGGAGATATTTTCCATCGTTTACAATATGCATAGAGAGAAATTCACGAAAAAACAAATGTAATTTACAGATGAGATGACTTGCTCAGATACTATTTGCTAAAACGTGAAAATTCTCTCCCTGAGTCTCTCTAGAGACTAAAAATTACAACAGCTGCTCCCACACTTGCACACCTATTATATGAAACAGGCTAAATAGCTTGTAGAAATTCAATATTAATACAATGCTGTTCTGCATTACAACAAACTATTTCTTGGGACAGCTGCCACGTTTACTTTTAAAAAGAATTCCCTTTAAAATAAACTCATATGCCTACCCATTTCATCCAGTTAAAAAATCTTCCAAGCCTCAAAGGCATTCCGTAATCCTTCACAATGGCAGGTTCACTCCTTCCACCTTTTGACCGGCACCATATATAAACCCCCCGTTCTTGCCTACTGCCCGGAACAGTATTGTCTAGGATAAAAGCCACCAGGAATGCAATCACCATGTGAAGTGAGAATAGAGTGTTTAATACATAATTCAGTCCACCGTTACTGCTACGGAAGGGTCCATGTGAAGCCACTATGTAGGGGCAGATAATAGCTTGGTACAGGAGTGTTTGCATTTGGTGAAACTCCATATTGTTGGAAGTAGGCAGGTATTGATAGCGAAAGGAAAAGAGAGAGACCTACAATGATAACATTCCTTGAGCTCCCAGTTTCACTGTATCGTAAATTTGATAAACCCAATGCCGCAAGCATAGCCCACATAAAACATAGAAGAGCAGCAACCATGGCTGGTGGAATCGAAGCTAAAATGGCTCCCACTTTGCCAACAAGTGAAATGAGGATTAACAATCCAGCACCAAGTTCCACAGCCCTTCTACTTCCCATATAATTTTCCTTTGGCAAGGCTTTCTTCAGTGCGAACCCTCTAGCACAGTGCAAACCCTCCGAGCCCTTAGGAATCTAGAGCATCAGATTTGAGTGGGACGCACGGCGGCCTTGGATTTCAAGGTTTCGAGTTCAGAAAGGTCTGAAGTCAGGCAGAAGATGGCTGCCCGTTGCGAGTCCCATGTACGATTTTCTTGTGGTGTCTTTGCCATGGTCATTTTGGTGGCTGTGCTAAGAGTGTGTCCAGTAGCAGCTCAGATATCTGAGATGGAAAGAGGAGATGACACATCGCACCGGTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCAAGGCAAAGTTGGCTATAGATACATTGCAAAATGAATCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGACTGGGCATTTTTGATGCATTTTTTGCAAGCTTGTCGATGATTCTTGTCAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGTTTTGTCTGGTGCTCTTAGTGCCCTTTTTGTGATGACAGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCAAGAAAACACACAAATAGGGCAGCTACAGTTTTATATGCTTTTTTTGGCCTGCGTTTACTTTACATAGCTTGGAGGTCTGATGCAAAGACTTCACATAAAAAGGAGATGGAGGAGGTGGAAGAAAAACTGGAAAGTGGAGCAGGAAAAACAACATTTCGCCGCTTTTTCACAAGGTTTTGTACACCAATTTTTTTGGAGTCATTTATTCTGACATTTTTGGCTGAGTGGGGAGATCGTAGCCAAATAGCAACAATTGCGCTGGCAACCCATAAGAATGCACTCGGGGTTGCTGTGGGTGCAACACTAGGTCACACGATATGCACTTCAGTGGCAGTCGTTGGGGGAAGTATGCTGGCATCAAAAATCTCGCAAAAGACCGTTGCTACTGTGGGAGGATTGCTGTTTCTTTGCTTTTCATTGAGTTCTTACTTTTACCCTCCCATGTAACTTCATTGTTGTAAAGTAATATTACATTTTTCCTGGCCCAAAGAATGATTGCTTCTCTGTATACAATTTATGAAGGACGAATTTATTATATTCATTTCATTCTTTTCCTAATTTAGGGTGCTCTGTCATACCAAACAGTCATTTGGCCGAGAGAAATGAATGTACTCTAACCTCAATCAACATGCTGTATAAATGTTAATGCAAGATGGGAGCTATTCTAGAAATGAGGCTAAAGGAGTGTAGCGATGGAGTGTTCTAAAACTGGAACTTCAAAGTTTTGACATGGAAGTTTAAAGCTTGATGAGGCATCATGATTCTAGCACATCAATAGCATATTTATGGTATAATGTAGTGACGCATACTGAAATTTAATAACTCTATCTTGAGAGTGTGATATATCATCATTAAGATCCTACTTTTGCCCTTTCCATGTAATCACATTGTCGTAAAGTATTTTTACATTTTTCTTGGCC

Ace file of the UniGene sp_v3.0_unigene30812

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0016 protein 3 [Arabidopsis thaliana] ref\|NP_851098.1\| UPF0016 protein 3 [Arabidopsis thaliana] sp\|Q93Y38.1\|GDT13_ARATH RecName: Full=GDT1-like protein 3; Flags: Precursor gb\|AAK96668.1\| transmembrane protein FT27/PFT27-like [Arabidopsis thaliana] gb\|A	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G36290.1	Uncharacterized protein family (UPF0016) chr5:14302977-14304972 FORWARD LENGTH=293	85%
RefSeq	Arabidopsis thaliana	NP_568535.1	UPF0016 protein 3 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002329003.1	predicted membrane protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSR6

Fln msg:

Fln protein: MAARCESHVRFSCGVFAMVILVAVLRVCPVAAQISEMERGDDTSHRSSNNLVKLPWRKAKLAIDTLQNESVMEQSDVKAVSVSDGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRNPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKTSHKKEMEEVEEKLESGAGKTTFRRFFTRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLGHTICTSVAVVGGSMLASKISQKTVATVGGLLFLCFSLSSYFYPPM*

Protein Length: 301

Fln nts: AGACAGAAATTAGACACTCAATTCTCTCGCTATGGCCGCCCATAGATGCAAAAATCAAATCCCAGATACAGTATAAGAATGTGAATTCAGGAGATATTTTCCATCGTTTACAATATGCATAGAGAGAAATTCACGAAAAAACAAATGTAATTTACAGATGAGATGACTTGCTCAGATACTATTTGCTAAAACGTGAAAATTCTCTCCCTGAGTCTCTCTAGAGACTAAAAATTACAACAGCTGCTCCCACACTTGCACACCTATTATATGAAACAGGCTAAATAGCTTGTAGAAATTCAATATTAATACAATGCTGTTCTGCATTACAACAAACTATTTCTTGGGACAGCTGCCACGTTTACTTTTAAAAAGAATTCCCTTTAAAATAAACTCATATGCCTACCCATTTCATCCAGTTAAAAAATCTTCCAAGCCTCAAAGGCATTCCGTAATCCTTCACAATGGCAGGTTCACTCCTTCCACCTTTTGACCGGCACCATATATAAACCCCCCGTTCTTGCCTACTGCCCGGAACAGTATTGTCTAGGATAAAAGCCACCAGGAATGCAATCACCATGTGAAGTGAGAATAGAGTGTTTAATACATAATTCAGTCCACCGTTACTGCTACGGAAGGGTCCATGTGAAGCCACTATGTAGGGGCAGATAATAGCTTGGTACAGGAGTGTTTGCATTTGGTGAAACTCCATATTGTTGGAAGTAGGCAGGTATTGATAGCGAAAGGAAAAGAGAGAGACCTACAATGATAACATTCCTTGAGCTCCCAGTTTCACTGTATCGTAAATTTGATAAACCCAATGCCGCAAGCATAGCCCACATAAAACATAGAAGAGCAGCAACCATGGCTGGTGGAATCGAAGCTAAAATGGCTCCCACTTTGCCAACAAGTGAAATGAGGATTAACAATCCAGCACCAAGTTCCACAGCCCTTCTACTTCCCATATAATTTTCCTTTGGCAAGGCTTTCTTCAGTGCGAACCCTCTAGCACAGTGCAAACCCTCCGAGCCCTTAGGAATCTAGAGCATCAGATTTGAGTGGGACGCACGGCGGCCTTGGATTTCAAGGTTTCGAGTTCAGAAAGGTCTGAAGTCAGGCAGAAG_-_ATGGCTGCCCGTTGCGAGTCCCATGTACGATTTTCTTGTGGTGTCTTTGCCATGGTCATTTTGGTGGCTGTGCTAAGAGTGTGTCCAGTAGCAGCTCAGATATCTGAGATGGAAAGAGGAGATGACACATCGCACCGGTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCAAGGCAAAGTTGGCTATAGATACATTGCAAAATGAATCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGACTGGGCATTTTTGATGCATTTTTTGCAAGCTTGTCGATGATTCTTGTCAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGTTTTGTCTGGTGCTCTTAGTGCCCTTTTTGTGATGACAGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCAAGAAAACACACAAATAGGGCAGCTACAGTTTTATATGCTTTTTTTGGCCTGCGTTTACTTTACATAGCTTGGAGGTCTGATGCAAAGACTTCACATAAAAAGGAGATGGAGGAGGTGGAAGAAAAACTGGAAAGTGGAGCAGGAAAAACAACATTTCGCCGCTTTTTCACAAGGTTTTGTACACCAATTTTTTTGGAGTCATTTATTCTGACATTTTTGGCTGAGTGGGGAGATCGTAGCCAAATAGCAACAATTGCGCTGGCAACCCATAAGAATGCACTCGGGGTTGCTGTGGGTGCAACACTAGGTCACACGATATGCACTTCAGTGGCAGTCGTTGGGGGAAGTATGCTGGCATCAAAAATCTCGCAAAAGACCGTTGCTACTGTGGGAGGATTGCTGTTTCTTTGCTTTTCATTGAGTTCTTACTTTTACCCTCCCATGTAA___CTTCATTGTTGTAAAGTAATATTACATTTTTCCTGGCCCAAAGAATGATTGCTTCTCTGTATACAATTTATGAAGGACGAATTTATTATATTCATTTCATTCTTTTCCTAATTTAGGGTGCTCTGTCATACCAAACAGTCATTTGGCCGAGAGAAATGAATGTACTCTAACCTCAATCAACATGCTGTATAAATGTTAATGCAAGATGGGAGCTATTCTAGAAATGAGGCTAAAGGAGTGTAGCGATGGAGTGTTCTAAAACTGGAACTTCAAAGTTTTGACATGGAAGTTTAAAGCTTGATGAGGCATCATGATTCTAGCACATCAATAGCATATTTATGGTATAATGTAGTGACGCATACTGAAATTTAATAACTCTATCTTGAGAGTGTGATATATCATCATTAAGATCCTACTTTTGCCCTTTCCATGTAATCACATTGTCGTAAAGTATTTTTACATTTTTCTTGGCC

Fln Alignment:

Contig30812___QKMAARCESHVRFSCGVFAMVILVAVLRVCPVAAQISEMERGDDTSHRSSNNLVKLPWRKAKLAIDTLQNESVMEQSDVKAVSVSDGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRNPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKTSHXXXXXXXXXXXXSGAGKXXXXXXXXXXCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLGHTICTSVAVVGGSMLASKISQKTVATVGGXXXXXXXXXXXXXPPM
A9NSR6_______________QKMAARCESHVRFCYGVFAMVILVAVLRACPVAAQISEMERGDDPSHRSSNDLVKLPWRKAKLAIDPLQNDSVMEQSDVKAASVSDGQGIFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKNSQKKEMEEVEEKLENGAGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLGHTVCTSVAVIGGSMLASKISQRTVATVGGLLFLCFSLSSYFYPPM

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
283	68	31			1.0
552	80		20		0.995493
1204	71	28			1.0
1216	14	85			0.999981
1262		14	85		0.999981
1264		85	14		0.999981
1582	68		31		1.0
1611	15			84	0.999986
1612	83			16	0.999991
1677	83	16			0.994512
1741		66		16	0.988813
1901	77		22		0.999999
2299	88		11		0.923564
2314	88	11			0.923564
2315	11		88		0.923564
2328		50		50	1.0
2362			42	57	1.0
2418			4	86	0.999539
2454	12	87			0.992554
2456	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain