SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30721

Length: 1000 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30721 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abscisic acid-induced protein-like n=4 Tax=Oryza sativa RepID=Q5JM42_ORYSJ	-	-	2.0e-40	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Protein HVA22, putative	-	-	1.367e-15	-

Source	Gene names
Sma3	At1g74520; At2g42820; At4g24960; At5g50720; At5g62490; F13M23.100; F1M20.20; F7D19.18; GSVIVT00000126001; GSVIVT00001866001; GSVIVT00018936001; GSVIVT00036995001; HVA22; HVA22A; HVA22B; HVA22D; HVA22E; HVA22F; K19B1.10; LOC_Os11g30500; LOC_Os11g38920; MFB

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G42820.1	HVA22F HVA22-like protein F chr2:17817460-17818301 REVERSE LENGTH=158	52%
RefSeq	Arabidopsis thaliana	NP_181810.2	HVA22-like protein f [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002299111.1	predicted protein, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
593		20		80	0.995493
960	16	83			0.994512
962		40	60		1.0
963	40	40		20	1.0
964		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain