SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30687

Length: 1176 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30687

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit emb\|CAA63223.1\| TOM20 [Solanum tuberosum]	-	-	4.06377e-44	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane translocase complex	GO:0005742	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein import into mitochondrial outer membrane	GO:0045040	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant specific mitochondrial import receptor subunit TOM20	IPR010547	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27080.1	TOM20-3 translocase of outer membrane 20 kDa subunit 3 chr3:9985212-9986560 REVERSE LENGTH=202	47%
RefSeq	Arabidopsis thaliana	NP_189344.1	mitochondrial import receptor subunit TOM20-3 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002298627.1	predicted protein, partial [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSZ0

Fln msg:

Fln protein: MEVERIILFESARDKAAEQYLRSPLDADNLIRWGGVLLELAHFYKGQASVNMLQDAVSKFEEALKINPKEHYALWCLGNAFTAQNFLLFDTGKVNVNFRKAVECYQKALDEDPHNEHYLKALEMAKKAPSLHKEILKQLTSEEVVVNEEMNIEGSSSQAIRKKKNSDFKYDMLGWVALSVGIIAWAGLARSALQLHLVSSACP*

Protein Length: 205

Fln nts: TTTTGAACTAGAATAAACCATTACAATACTTGGGGCGGAATCGAGATGAACAGAAAAACATTGGTTAAATTTTGGAGCATAAAATATTTGGGAGTAATTCGAACTTGGGAGCTATTGATAAGAAAACTTGATTGTGGCTTGAAATATTCGGAGTTGTTGGTGTTAGAAGTGGC_-_ATGGAGGTGGAAAGAATTATATTGTTCGAATCCGCTAGAGACAAAGCAGCCGAGCAGTATCTGCGTTCGCCTCTCGACGCCGATAATTTAATACGATGGGGTGGAGTACTGCTTGAACTTGCCCACTTTTATAAAGGACAAGCATCGGTTAACATGCTTCAAGATGCTGTGTCCAAGTTTGAGGAAGCTCTGAAAATTAATCCAAAAGAGCATTATGCTTTATGGTGTTTGGGAAATGCTTTTACAGCTCAAAACTTCCTTTTATTTGACACGGGGAAGGTGAATGTGAACTTCAGGAAAGCTGTAGAGTGTTATCAAAAGGCTCTAGATGAGGACCCTCACAACGAGCATTATTTGAAGGCTTTGGAGATGGCAAAGAAGGCACCTTCTCTTCACAAGGAGATATTGAAACAACTGACTTCTGAAGAGGTTGTAGTGAATGAAGAAATGAATATTGAAGGAAGTTCCTCACAGGCTATAAGGAAAAAGAAAAACAGTGATTTCAAGTATGATATGCTTGGTTGGGTTGCGTTATCAGTTGGAATAATTGCATGGGCTGGATTGGCCAGGTCAGCACTACAGTTACATCTAGTATCCTCGGCATGTCCATGA___GGGCATATTCATGTGACATTAGCGTTTCTTTTGGCCGAGAATTGGCATACCAGCACTTAGTGTACATAATTGTATATATGAATTTGTAGACTTCAGATTGAGAAATTTCTCTAACAATGTACACAGTTAGAAAAGAGGATCGGTAGAATGGATATGGATTTTACAACCTTATAAGGCTTTAGAGTAATTAATAATAGTGGCTAAATATTCTGTTAGCTTTCATTGAACTCGTGTAATTATGTACAGTGTAGCATGCAAGTTGTAACATGTTCTTATGATGAAAAAATGTTTAGCTTCAGCTTGTAGCTCTGCACCCTTGGAGCCTAGTAAATTAGAGTTTTCAAGGAAAGCATTTTATTGGTTTGCATTGTTTTCCGCATAATAGAATTAT

Fln Alignment:

Contig30687___MEVERIILFESARDKAAEQYLRSPLDADNLIRWGGVLLELAHFYKGQASVNMLQDAVSKFEEALKINPKEHYALWCLGNAFTAQNFLLFDTGKVNVNFRKAVECYQKALDEDPHNEHYLKALEMAKKAPSLHKEILKQLTSXXXXXXXXMNIEGSSSQAIRKKKNSDFKYDMLGWVALSVGIIAWAGLARSALQLHLVSSAC
A9NSZ0_______________MEVERIVLFESARDKAAKEYLRSPHDADNLIRWGGVLLELAHFYQGQASINMLQDAVSKFEEALKINPKGHYALWCLGNALTSQNFLFPDMGKVNENFRKAEECYQKALDEDPHNEHYLKGLEMAKKAPSLHKEILKQLTSEQVVVNEAMNIEGSSSQAIKKKKNSDFKYDMLGWVALTVGIIAWVGLARSALQLPLPSLTC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
802		60		40	1.0
990	88		11		0.923564
1009	4	2		93	0.976545
1010		4	95		0.99692
1115	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain