SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30657

Length: 2168 nt

UniGene Fasta

>sp_v3.0_unigene30657
ATAGAAAGGAGCATGGAGTTAACATTAGCAGGTTATCCCACTTCGAAAACAACCCATAAAACAGAGAATATAACAATTAAAAGATGCGATCACACTAGCACAGAGTTTTACCCCAAAACCAACCTGGATATAAGAGTTGACTGTCTTGGTGTATCCATTGGAGCAAAAAATATTGAAGTACCGAAGCCATGATCGCTGCACACACATTTGGAGAGATCTTGTTATGAATACGGCCAAATACGGTCCCATATCTAGATTTACACATGTTTGCTAATCGTACACTCCGGAGCCAAGCGAATTCACACGCGTAGCAATTATAAGAAACAGTTCTGAAAATTTACGGATTACAAAAACAAAGAGGAAGGTGCCGAGATTGGAAATTAGAAACAGCAAAACAAGGTACAAAGCGAGATGTCTCTTACCGGGCTGAAGATGACGGAGGAGGTCTGGCTCACATGCCTTACCCACGCTCTTTCCACTGAAACTGAAGAAATCATGGGTCTTTTACTCGGAGATGTCGAGTATTTAAGCAATGGGAGTTCAACTGCACTTGTTTGGGGTGCTGCTCCTCAACCCCGATGCGATCGCCGGAAAGACCGCGTCGAGACCAATCCCGAGCAACTGGCAGCGGCGTCTGCTCTAGCCGAGAGAATGTCAGCAGAAATTGGAAGAACAACAAGAGTGATAGGATGGTACCATTCGCATCCACATATTACTGTCCTTCCTTCACATATTGATGAGCGGACACAAGGATTGTATCAGTTGCTAGATCCAGGATTTATTGGTGTAATATTTTCTTGTTTTAGCGAGGATGCCCAGAAGGTTGGTAGGATTCAAGTAATAGCTTTTCAGGCCCTTGATGGGAAGCAAAAACACCTAACACGGGTTCCTGTTCAAGTAGCTCAGGCAATTGTTGTTGCTGGTTCAGAAACGGAGTTGACAAGAACTACATTAGGAAGTTCGATGCCAAAATCCACAACTGGACAGCCAGAAATAATTGACCTAGATCCCGTGAACCCAAAGGCTTCAGTTGGTACTGTTAAGTTCCAAATTGGAGATAAAACACAAACTGCTTTGGACAAATTCTTTGACAGTGCTGAATCTGAATCATCTCGAAGAAGAGAGAAGATGGGACCAGAATCAGTTTCTCTTTATCACAATGGAAGCTTGAGGAGCTCACTTAGTGATTTGGATTCAATGGACTTGACTTCCAGGATGCAGGAGGCTGTGCATCGGTCAACTTTGGATGTGAGTGGTGCAGAGTATGCAAGGAAGGAGGTTCCACTGCAAGTTGGCACTGGCCATCCTGTTGCGAAATTTGAATTTCCTTTAAGCTCGTTTGTTGATTTACAGAAATTACTTTTTACAGAGGAACAAACAGCTTATAACCAGGCTATGTCACAGAGTGCAAGGAATGGTAAAGTACACCCTCTTGCAGCGATTCATCATTCATCAACATACCAAGCCTCAATGTGCAAGCTCATGGAGTACTGTCTATCTCCAGTTATTAGTTCTCTTTGGGACCGCCTGGAGGAGAACAAACTGAGGATAGCAATGCTACAAGAAGAAGCTATTTCTTTAGAACTTGAACTTTTCAACAAAGGGAGTCATAGTGTTCAGCCTTCAAGGCGTTCCTCAAATAGGGGTGCAGTTTATGCTGGATCCCCAGAGCCAAAATCATCAATGGATTCATTATCAAACGTCAGAGGCTTCAGTCCTATGGGTGGCGTGAATCCCCGTCATAGTACAAATCGGTAGCCAGATGTCATCTAGACAAAATATTAGCAACCATAAATATAGCTCAATGTTTTATATGTTCTTGTACACCATTGGGGAAATTGCTCTTAGTGGTGTTTGGTTGTACTGGAATTATTGAACGGTTTTATCCAACTGGTACTTTCTTGGGGAATTTTGACATACAGAAGTGAAGATCCCCAGAAGATACGTGCAATGCTGTTTATTTTGTATCATGTAAAATTTGCCTTATACTACTTATGTAGAATTTTGTGACAATGAAATTGGTTACTTCTCTAGCTTTCATGTTGCATGTCATCAACCTTGTAAGCAGTTGCGCCATTGAAACAACAATAGGAGGCAAATGAAATCAATTAGAGTTTGTATAACCTTTTCAAGGATTACCATGCAACTATTTCCTATTAGCAATATTA

Ace file of the UniGene sp_v3.0_unigene30657

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana] gb\|AEE74463.1\| BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G06820.2	BRCC36B, AtBRCC36B Mov34/MPN/PAD-1 family protein chr3:2151027-2153264 REVERSE LENGTH=405	52%
RefSeq	Arabidopsis thaliana	NP_001078118.1	BRCA1/BRCA2-containing complex subunit 3 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002299607.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW21

Fln msg:

Fln protein: MSLTGLKMTEEVWLTCLTHALSTETEEIMGLLLGDVEYLSNGSSTALVWGAAPQPRCDRRKDRVETNPEQLAAASALAERMSAEIGRTTRVIGWYHSHPHITVLPSHIDERTQGLYQLLDPGFIGVIFSCFSEDAQKVGRIQVIAFQALDGKQKHLTRVPVQVAQAIVVAGSETELTRTTLGSSMPKSTTGQPEIIDLDPVNPKASVGTVKFQIGDKTQTALDKFFDSAESESSRRREKMGPESVSLYHNGSLRSSLSDLDSMDLTSRMQEAVHRSTLDVSGAEYARKEVPLQVGTGHPVAKFEFPLSSFVDLQKLLFTEEQTAYNQAMSQSARNGKVHPLAAIHHSSTYQASMCKLMEYCLSPVISSLWDRLEENKLRIAMLQEEAISLELELFNKGSHSVQPSRRSSNRGAVYAGSPEPKSSMDSLSNVRGFSPMGGVNPRHSTNR*

Protein Length: 450

Fln nts: ATAGAAAGGAGCATGGAGTTAACATTAGCAGGTTATCCCACTTCGAAAACAACCCATAAAACAGAGAATATAACAATTAAAAGATGCGATCACACTAGCACAGAGTTTTACCCCAAAACCAACCTGGATATAAGAGTTGACTGTCTTGGTGTATCCATTGGAGCAAAAAATATTGAAGTACCGAAGCCATGATCGCTGCACACACATTTGGAGAGATCTTGTTATGAATACGGCCAAATACGGTCCCATATCTAGATTTACACATGTTTGCTAATCGTACACTCCGGAGCCAAGCGAATTCACACGCGTAGCAATTATAAGAAACAGTTCTGAAAATTTACGGATTACAAAAACAAAGAGGAAGGTGCCGAGATTGGAAATTAGAAACAGCAAAACAAGGTACAAAGCGAG_-_ATGTCTCTTACCGGGCTGAAGATGACGGAGGAGGTCTGGCTCACATGCCTTACCCACGCTCTTTCCACTGAAACTGAAGAAATCATGGGTCTTTTACTCGGAGATGTCGAGTATTTAAGCAATGGGAGTTCAACTGCACTTGTTTGGGGTGCTGCTCCTCAACCCCGATGCGATCGCCGGAAAGACCGCGTCGAGACCAATCCCGAGCAACTGGCAGCGGCGTCTGCTCTAGCCGAGAGAATGTCAGCAGAAATTGGAAGAACAACAAGAGTGATAGGATGGTACCATTCGCATCCACATATTACTGTCCTTCCTTCACATATTGATGAGCGGACACAAGGATTGTATCAGTTGCTAGATCCAGGATTTATTGGTGTAATATTTTCTTGTTTTAGCGAGGATGCCCAGAAGGTTGGTAGGATTCAAGTAATAGCTTTTCAGGCCCTTGATGGGAAGCAAAAACACCTAACACGGGTTCCTGTTCAAGTAGCTCAGGCAATTGTTGTTGCTGGTTCAGAAACGGAGTTGACAAGAACTACATTAGGAAGTTCGATGCCAAAATCCACAACTGGACAGCCAGAAATAATTGACCTAGATCCCGTGAACCCAAAGGCTTCAGTTGGTACTGTTAAGTTCCAAATTGGAGATAAAACACAAACTGCTTTGGACAAATTCTTTGACAGTGCTGAATCTGAATCATCTCGAAGAAGAGAGAAGATGGGACCAGAATCAGTTTCTCTTTATCACAATGGAAGCTTGAGGAGCTCACTTAGTGATTTGGATTCAATGGACTTGACTTCCAGGATGCAGGAGGCTGTGCATCGGTCAACTTTGGATGTGAGTGGTGCAGAGTATGCAAGGAAGGAGGTTCCACTGCAAGTTGGCACTGGCCATCCTGTTGCGAAATTTGAATTTCCTTTAAGCTCGTTTGTTGATTTACAGAAATTACTTTTTACAGAGGAACAAACAGCTTATAACCAGGCTATGTCACAGAGTGCAAGGAATGGTAAAGTACACCCTCTTGCAGCGATTCATCATTCATCAACATACCAAGCCTCAATGTGCAAGCTCATGGAGTACTGTCTATCTCCAGTTATTAGTTCTCTTTGGGACCGCCTGGAGGAGAACAAACTGAGGATAGCAATGCTACAAGAAGAAGCTATTTCTTTAGAACTTGAACTTTTCAACAAAGGGAGTCATAGTGTTCAGCCTTCAAGGCGTTCCTCAAATAGGGGTGCAGTTTATGCTGGATCCCCAGAGCCAAAATCATCAATGGATTCATTATCAAACGTCAGAGGCTTCAGTCCTATGGGTGGCGTGAATCCCCGTCATAGTACAAATCGGTAG___CCAGATGTCATCTAGACAAAATATTAGCAACCATAAATATAGCTCAATGTTTTATATGTTCTTGTACACCATTGGGGAAATTGCTCTTAGTGGTGTTTGGTTGTACTGGAATTATTGAACGGTTTTATCCAACTGGTACTTTCTTGGGGAATTTTGACATACAGAAGTGAAGATCCCCAGAAGATACGTGCAATGCTGTTTATTTTGTATCATGTAAAATTTGCCTTATACTACTTATGTAGAATTTTGTGACAATGAAATTGGTTACTTCTCTAGCTTTCATGTTGCATGTCATCAACCTTGTAAGCAGTTGCGCCATTGAAACAACAATAGGAGGCAAATGAAATCAATTAGAGTTTGTATAACCTTTTCAAGGATTACCATGCAACTATTTCCTATTAGCAATATTA

Fln Alignment:

Contig30657___MGLLLGDVEYLSNGSSTALVWGAAPQPRCDRRKDRVETNPEQXXXXXXXXXXXXXXIGRTTRVIGWYHSHPHITVLPSHIDERTQGLYQLLDPGFIGVIFSCFSEDAQKVGRIQVIAFQALDGKQKHLTRXXXXXXXXXXXXGSETELTRTTLGSSMPKSTTGQPEIIDLDPVNPKASVGTVKFQIGDKTQTALDKFFDSAXXXXXXXXXKMGPESVSLYHNGXXXXXXXXXXXXXXXXXXQEAVHRSTLDVSGAEYARKEVPLQVGTGHPVAKFEFPLSSFVDLQKLLFTEEQTAYNQAMSQSARNGKVHPLAAIHHSSTYQASMCKLMEYCLSPVISSLWDRLEENKLRIAMLQEEAISLELELFNKGSHSVQPSRRSSNRGAVYAGSPEPKSSMDSLSNVRGFSPMGGVNPRHSTNR
A9NW21_______________MGLLLGDVENLNNGSSTALVWGAAPQPRCDRRKDRVETNPEQLAAASALAERMSAEVGRTTRVIGWYHSHPHITVLPSHIDERTQGLYQLLDPGFIGVIFSCFSEDAQKVGRIQVIAFQALDGKHKHLTRVPVQVAPVNVVAGSEAELTRTTLGNSMPKSTTGQPEIIDLDPVNTKVSVGTTKFQIGDKTQTALDKFFDNAESESSRRRDKMGPESASPYHNGSLRNSISNLDSMDLTSRMQEAVHRSTLDVSGAEYARKEVPLQVVTGHPVAKFEFPLSSFVDLQHLLFTEEQIAYNQAMLQSARNGRVHPLAAIHHSSTYQASMCKLMEYCLSPVISSLWDRLEENKLRLAMLQEEAISLELELFNKGSHSVQPSRRSSNRGAVYAGSPEPKSSMDSLSNVRGFSPMGGMIPRQSTNR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1829	88	11			0.923564
1830			11	88	0.923564
1832		11	88		0.923564
1834			88	11	0.923564
1837	88	11			0.923564
1838	88	11			0.923564
1844		88	11		0.923564
1846		11		88	0.923564
1848		11	88		0.923564
1850		11	88		0.923564
1851	11		88		0.923564
1900	25			75	1.0
2038		18		81	0.999994
2141	50		50		1.0
2154		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain