SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30607

Length: 944 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30607

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	embryo-abundant protein [Picea glauca]	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Embryo-abundant protein EMB-like	-	-	5.669e-09	-

Source	Gene names
Sma3	AT4g22530; At2g41380; At4g22530; At5g10830; EMB34; GSVIVT00000686001; GSVIVT00000687001; GSVIVT00000688001; GSVIVT00017389001; GSVIVT00017391001; MtrDRAFT_AC153128g11v2; MtrDRAFT_AC153128g24v2; MtrDRAFT_AC153128g8v2; OsI_02636; OsI_02641; OsI_11014; OsJ_0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L31	IPR002150	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Methyltransferase type 12	IPR013217	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41380.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr2:17251981-17252886 FORWARD LENGTH=269	52%
RefSeq	Arabidopsis thaliana	NP_181669.1	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002308901.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQD7

Fln msg:

Fln protein: MAAGLFDKQAREYADARPHYPPELFSFIATHTPHRRLAWDVGTGSGQAALALSEIFESVIATDVSEQQISYAPRRPNITYEVTPRAMSVEELESTVGAEGSVDLVTVAQALHWFDLETFYGHVKHVLRKPGGVFAAWCYREPVVNPSVDRVFEDLYRASAPFWDPARQIVDDEYASLSFPFRGVVQEGSEKGESTTGPIKLWAKKEMGLDGYMTYLRSWSAYQTAKATGVDLLDEQMVARFKDAWGGIEVKTVSWPVFLRIGLV*

Protein Length: 266

Fln nts: AAGGCATGAAGGCTGGAAACGAGGTTGGGAATATCAAAT_-_ATGGCAGCAGGATTGTTTGACAAGCAGGCAAGGGAGTACGCGGATGCAAGGCCCCATTACCCACCTGAGCTCTTCTCCTTCATTGCCACACACACGCCCCACCGCCGCCTGGCTTGGGACGTTGGCACCGGCAGCGGTCAAGCTGCACTTGCTTTGTCTGAGATATTCGAGAGCGTGATAGCGACGGATGTGAGCGAGCAGCAGATCAGCTACGCTCCCAGGCGCCCCAACATAACTTACGAGGTGACTCCCCGGGCGATGTCGGTGGAGGAGCTGGAGAGCACCGTAGGAGCAGAGGGGAGCGTGGATCTGGTGACGGTGGCGCAGGCTCTTCATTGGTTCGATCTGGAGACCTTTTATGGGCATGTGAAGCACGTTCTGCGGAAGCCCGGTGGGGTATTTGCGGCGTGGTGCTACAGAGAACCGGTTGTAAACCCAAGCGTTGACCGCGTATTTGAGGATCTGTACCGTGCATCCGCCCCCTTTTGGGACCCCGCCCGTCAAATAGTGGACGACGAATACGCATCGTTGTCCTTCCCGTTCCGGGGCGTTGTCCAAGAGGGCTCAGAGAAAGGGGAGTCGACAACGGGTCCCATAAAATTGTGGGCAAAGAAGGAGATGGGGTTGGATGGGTACATGACTTATTTGAGATCGTGGTCTGCTTATCAGACGGCGAAGGCCACGGGAGTCGATCTGCTGGACGAACAAATGGTTGCTCGTTTCAAGGATGCGTGGGGCGGAATCGAGGTGAAGACCGTCAGTTGGCCCGTGTTCCTCAGAATAGGCCTTGTTTAA___CCTCTTCTAAGGTCTATTTGTTTCATCGCTGCAGATATGTGAACAGTCAAATGATTCCAATAAACATTTATCCTTGCGAGCAATAATACCTTTTTTAAATATTTATATCC

Fln Alignment:

Contig30607___AGLFDKQAREYADARPHYPPELFSFIATHTPHRRLAWDVGTGSGQAALALSEIFESVIATDVSEQQISYAPRRPNITYEVTPRAMSVEELESTVGAEGSVDLVTVAQALHWFDLETFYGHVKHVLRKPGGVFAAWCY-REPVVNPSVDRVFEDLYRASAPFWDPARQIVDDEYASLSFPFRGVVQEGSEKGESTTGPIKLWAKKEMGLDGYMTYLRSWSAYQTAKATGVDLLDEQMVARFKDAWGGI--EVKTVSWPVFLRIGLV
A9NQD7_______________AGLFDRQAREYANGRPQYPPQLFSLIAKHSPHRRLAWDVGTGSGQAALALSEIFERVIATDVSEQQISYAPRRPNITYTVTPRQMSLEELESTVGAEGSVDLVTVAQALHFFDLHTFYGQVKHVLRKPGGVFAAWCYNREAVVNPSVDRVFQDLYRASDPFWTPARQLVDSEYTTIDFPFRSVAQEGSEGEESTTAPIKFWAKKELGFEGYLSLIRSWSAYQIAKGKGVELLDDQIVARLKQAWGGSDEDVKTVSWPVFLRIGVV

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
263	12		87		0.992554
304	37		62		1.0
417		11		88	0.923564
418		55	11	33	1.0
422		12	87		0.992554
423			87	12	0.992554
424	87			12	0.992554
425	87		12		0.992554
428		87		12	0.992554
430	14		85		0.993533
431		14	85		0.993533
434		14	85		0.993533
435	14		85		0.993533
480		80		20	0.995493
483			40	60	1.0
510		25		75	0.996473
563		60		40	1.0
778	18		81		1.0
779	9		90		0.999842
787	31		68		1.0
826	23	76			1.0
834	76		23		1.0
838		76	23		1.0
845		11	88		0.999952
848		76		23	1.0
854		18	81		1.0
898	90			10	0.90298
899	10	90			0.90298
916	83	16			0.994512
933	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain