SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30488

Length: 1250 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30488 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycine cleavage system h protein, putative n=1 Tax=Ricinus communis RepID=B9S1I0_RICCO	-	-	57%
FL-Next	tr=Mitochondrial glycine decarboxylase complex H-protein; Pinus pinaster (Maritime pine).	-	-	100%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	glycine cleavage complex	GO:0005960	Cellular Component	0.0	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Glycine cleavage H-protein	IPR002930	-	-
Sma3	Glycine cleavage H-protein, subgroup	IPR017453	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32470.1	Single hybrid motif superfamily protein chr1:11739479-11740246 REVERSE LENGTH=166	61%
RefSeq	Arabidopsis thaliana	NP_174525.1	glycine cleavage system H protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002329524.1	precursor of carboxylase h-protein 3, glycine decarboxylase complex [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G3C8Z3

Fln msg:

Fln protein: MALRVWASQAATSLGIGCRRPLRSLGFPAVPFSRGFSDVIEGLKYADSHEWVKSDGKLGTVGITHHAQDHLGDVVFVDLPEVGVSVSKGSSFGAVESVKATSDIMSPVSGEVVETNTKLTETPALINGSPYGEGWIIKVRIKDPSEMDTLMNAEQYKRFCEEEDASH*

Protein Length: 169

Fln nts: TGtGCGATTGTGGATGACAAGATTGTGGACCATGTTATTCTGGAGTTTTAACAACAGATAATCTCATGGCCCAGCCCCGAAAAATAAGATATAATCTTTGTCGTGAGAACTTATTCATCCACGTTCACAGCTAATGTGAGTGGTCTGTCACCAGCTTAGAGTCTTATCTTTGTAGCTTGGGATCCATCA_-_ATGGCGTTGAGAGTGTGGGCATCTCAAGCTGCAACATCTCTTGGGATCGGATGCAGACGGCCTCTTCGCTCACTTGGATTCCCTGCTGTTCCTTTTTCTCGAGGATTTTCTGATGTTATTGAGGGGTTGAAGTATGCAGATTCCCATGAGTGGGTGAAATCTGATGGAAAACTTGGCACTGTGGGCATAACCCACCATGCTCAGGACCACTTGGGAGACGTCGTGTTTGTCGACCTGCCAGAAGTTGGAGTATCGGTTTCGAAAGGTAGCAGTTTCGGCGCAGTAGAGAGTGTAAAAGCAACTAGTGATATTATGTCTCCTGTTTCTGGAGAAGTAGTTGAAACCAACACAAAACTAACCGAGACTCCTGCCTTGATTAATGGAAGTCCATATGGTGAAGGGTGGATCATAAAAGTGCGCATTAAGGACCCATCAGAGATGGACACTTTAATGAATGCAGAGCAATATAAACGTTTCTGTGAAGAAGAAGATGCCAGTCACTGA___GGTATTCAGTTTTTTCTGTTTTGCTATCAGAAATAGCAAGCCACCAATGTCAATTTTCCAAAATCCTATTGTGGAAGCCAGTGTGTAGTAATTAAACATGCTGTGGGATGACACACATTATACTTCCAAACGTATTATCATTTATGTTTAATTCAAATTATGCCCTTTTCTCATGTGTAATGTAAGAGTAGATTCAGAATCCATTTTCATGCAGATAGTCTATTATTATTAACTAATGCGTTTAAAGACAGCCAAGTTTGAAACAAGTCTAATATTCAAAGGCTCTGGCAATTGATAGCTTTTCAAGTTTTCCTCTACAATTCAAGTCAAATTTGCAGTGTGACTTAGGCTTTCTGACAAAATGTTTATATTCTGGAGATCTTAGACATCACTGCATTACGTTTGATAATGTAAATGCTGAACTGGTTCAAGCCAAGCCCCCGTTTTCTTTACAATTTAATTTTCTTCTTTTATAGTTTCAGATAAAAGTAGATGAACTGTCAGGACATTATAGCATGTATGAGAAGTAAAACATATGAATCAACATTATCATTTAC

Fln Alignment:

Contig30488___MALRVWASQAATSLGIGCRRPLRSLGFPAVPFSRGFSDVIEGLKYADSHEWVKSDGKLGTVGITHHAQDHLGDVVFVDLPEXXXXXXXXXXXXXVESVKATSDIMSPVSGEVVETNTKLTETPALINGSPYGEGWIIKVRIKDPSEMDTLMNAEQYKRFCEEEDASH
G3C8Z3_______________MALRVWASQAATSLGIGCRRPLRSLGFPAVPFSRGFSDVIEGLKYADSHEWVKSDGKLGTVGITHHAQDHLGDVVFVDLPEVGVSVSKGSSFGAVESVKATSDIMSPVSGEVVETNTKLTETPALINGSPYGEGWIIKVRIKDPSEMDTLMNAEQYKRFCEEEDASH

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
859		2		97	0.966038
886	2	97			0.97849
889	97			2	0.97849
890			97	2	0.97849
908		96		3	0.986325
909		95		5	0.999992
964		6	93		0.99903
966	94			5	0.998894
1094	97		2		1.0
1139	3	9	87		1.0
1140		8	88	2	0.999999
1141	94	5			0.998894
1142		6		93	0.999153
1143		15	84		1.0
1144	84	15			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain