SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30482

Length: 945 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30482 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00188, CAP, Cysteine-rich secretory protein family	-	-	3.0e-16	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Pathogenesis-related protein 1	-	-	1.297e-38	-

Source	Gene names
Sma3	AT4g25780; AT4g25790; AT4g31470; AT4g33710; AT4g33720; AT4g33720/T16L1_210; AT4g33730; At1g01310; At1g50060; At2g14580; At2g14610; At2g19990; At3g09590; At3g19690; At4g25780; At4g25780/F14M19_60; At4g25790; At4g30320; At4g31470; At4g33710; At4g33720; At4g

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to vitamin B1	GO:0010266	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Allergen V5/Tpx-1-related	IPR001283	-	-
Sma3	Ves allergen	IPR002413	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	CAP domain	IPR014044	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25780.1	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein chr4:13121107-13121679 FORWARD LENGTH=190	60%
RefSeq	Arabidopsis thaliana	NP_194308.1	putative pathogenesis-related protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002325075.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
874	8			92	0.999718
886		77		22	0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
225	242	AATACA AATACA AATACA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain