SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30376

Length: 1143 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30376

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein [Arabidopsis thaliana] gb\|AAS76220.1\| At4g15770 [Arabidopsis thaliana] gb\|AEE83650.1\| RNA binding protein [Arabidopsis thaliana]	-	-	76%
FL-Next	sp=60S ribosome subunit biogenesis protein NIP7 homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Chromosome chr5 scaffold_2, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00019770001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ribosome assembly	GO:0042255	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	0.0	-
Sma3	Ribosome biogenesis factor, NIP7	IPR016686	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G15770.1	RNA binding chr4:8978060-8978623 FORWARD LENGTH=187	76%
RefSeq	Arabidopsis thaliana	NP_193312.5	RNA binding protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002315558.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAB5

Fln msg:

Fln protein: MRPLDEQETTTVFEKLHKFVGANLKHIVERSSGEGPDTKAGGLYCFRLHKNRVYYVSEALVKRATNISRDRLVSLGTCIGKFTKSGKFQLTIQSLDLLAAHAKRKIWLKPTAEMSFLYGNHVLKGGLGRITENTAQNEGVVIFSMSDVPLGFGVAAKSTQDCRKLDPNAIVAYHQSDIGEYLRIEDEL*

Protein Length: 190

Fln nts: ATTGTCCTTACCATGTTAATTCTTTCGATTCAACCCTCGGTGACGTCCTGTCTATAAAACTTTAAAGCCCTAAAACCCTGGACTGCAATCTAAACCCTACATCCTGGATCGCAAACCCAACCCTAAACCTCACAAATTCTTGTCTCCTCACAGCGGAATCGGTTTTCGTGTTCTCCACAATCCATTTTAGACAGCACCTAATTCGTTAAACAGCGCTATTTTACCTAGATTTGGAGAATTTTATCTTCAGG_-_ATGAGACCTCTGGACGAGCAGGAAACGACCACGGTCTTTGAGAAACTCCACAAATTCGTGGGCGCAAACCTCAAGCACATAGTGGAGCGCTCTTCAGGGGAAGGGCCCGACACCAAAGCCGGAGGACTGTATTGCTTTCGCCTGCACAAAAACCGCGTGTACTACGTGAGCGAAGCGCTGGTGAAGAGAGCCACCAATATCTCCAGAGACCGCCTGGTGAGTCTCGGCACCTGCATCGGGAAATTCACTAAGAGCGGTAAGTTCCAGCTTACCATACAATCCCTCGATTTGCTTGCCGCACATGCCAAGCGCAAAATCTGGCTGAAGCCCACGGCCGAGATGTCTTTTCTCTATGGCAACCATGTTTTGAAGGGCGGACTGGGAAGGATAACAGAGAATACTGCTCAGAATGAGGGCGTTGTTATCTTTTCAATGTCCGATGTTCCCTTAGGGTTTGGGGTGGCTGCCAAATCCACTCAGGACTGTAGAAAGCTTGACCCTAATGCAATTGTTGCTTACCATCAGTCTGATATTGGCGAGTATTTGCGCATAGAAGACGAACTCTAA___AAATTCAGTTTGCCCTGTGGGTAACCATGTTTTTGTTAAATTTATGAATTATTTCCTGTTGTTTTATGCACTCTGGTTGTATATGAGAGAATTGAGCATTTTGGACGGACTTCGGGGAGATGATCAGCGTTATATGTGTATCATTAATGTTGGTGGATTGCTTTTGAGGTTGGTTACAGTCTTGACTTGTATTGAGTGAAAGAGTGAATTTATCACTTACATTAACCATTCTGTCAAACATTTCTATTCTAGCCTTTCTTTGAAATGCTCTGCATTTTTTTAAGGCAATGGTTTGATTAAAAAACTTTAAAGGCAAGTTGCATTC

Fln Alignment:

Contig30376___MRPLDEQETTTVFEKLHKFVGANLKHIVERSSGEGPDTKAGGLYCFRLHKNRVYYVSEALVKRATNISRDRLVSLGTCIGKFTKSGKFQLTIQSLDLLAAHAKRKIWLKPTAEMSFLYGNHVLKGGLGRITENTAQNEGVVIFSMSDVPLGFGVAAKSTQDCRKLDPNAIVAYHQSDIGEYLRIEDEL
D5AAB5_______________MRPLDEEETTVVFEKLHKFVGTNLKHIVERPSGEGPDMKTGGLYCFRMHKNRVYYVSEALVKRATNISRERLVSLGTCIGKFTKSGKFQLTIQSLDLLAAHAKRKIWLKPTSEMSFLYGNHVLKGGLGRITENTAQNEGVVIFSMSDVPLGFGVAAKSTQDCRKLDPNAIVAYHQSDIGEYLRIEDEL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
844	27	72			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain