SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30352

Length: 983 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30352 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L3 n=1 Tax=Pinus monticola RepID=D3IZ07_PINMO	-	-	94%
FL-Next	tr=Thaumatin-like protein L3; Pinus monticola (Western white pine) (Strobus monticola).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11650.1	ATOSM34, OSM34 osmotin 34 chr4:7025127-7026113 REVERSE LENGTH=244	54%
RefSeq	Arabidopsis thaliana	NP_192902.1	osmotin-like protein OSM34 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002325077.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D3IZ07

Fln msg:

Fln protein: MARALGVLLIFMAALYICMQGVRCATFEIQNECPFTVWAAGIPNVGGKQLERGQSWTVQFPAGTTGRFWGRTGCSFDGSGRGSCKTGDCGGLLNCQGSGSVPATLAEIAVNQFQNLDFYDVSLVDGFNLPLSIIPSNGQCTKSICSSDINSKCPAELKVPDGCKSACVAFNTPQYCCTGTFLENCPPSDYSRFFKRECPQAYSYAKDDTTSTFTCPGGTNYKVVFCGTGTSHEAHLYSTA*

Protein Length: 242

Fln nts: ATATACTCAGACTTGAGAATATTCACAATTACTTGCTTCCTCGTACAGTCTCTTCGTGAGTGAAAGTTCGAATCACAGCGGTAGCA_-_ATGGCGAGAGCGTTGGGAGTTTTGCTTATATTCATGGCAGCGTTATACATTTGCATGCAAGGTGTAAGATGCGCGACATTCGAGATCCAAAACGAGTGCCCGTTCACTGTTTGGGCAGCCGGGATTCCCAACGTTGGAGGGAAACAGCTGGAGCGAGGGCAGTCGTGGACGGTTCAATTCCCCGCGGGAACAACGGGCAGGTTCTGGGGACGCACAGGCTGTTCCTTCGACGGCAGTGGCAGAGGCAGTTGCAAAACTGGGGACTGCGGGGGTCTGCTAAACTGTCAAGGATCGGGAAGTGTCCCCGCGACTCTGGCGGAAATCGCCGTGAATCAATTCCAGAACCTGGACTTCTATGACGTCTCGCTCGTCGATGGATTCAACCTGCCATTGTCGATCATACCGTCGAACGGTCAGTGCACAAAAAGTATCTGCAGCAGCGACATAAATTCCAAGTGCCCCGCAGAATTGAAGGTGCCCGACGGATGCAAGAGCGCCTGCGTTGCTTTCAATACGCCGCAGTATTGCTGTACTGGAACGTTTTTGGAAAATTGCCCTCCCTCTGATTACTCGCGTTTCTTCAAGAGGGAATGCCCTCAGGCGTACAGCTACGCAAAAGACGACACGACCAGCACCTTCACTTGCCCGGGAGGCACTAACTATAAAGTCGTCTTCTGCGGCACTGGCACCTCCCATGAAGCTCATCTTTACTCTACTGCCTGA___GCTCCTCAAAACCCTACCTTGCCAAAACAGTAGAAAAGCCGTTGGTGTAGAGGCCAGGAAATAAAATATCAGAAATAAGATGATGTTTAAAAAAACTATTGTGTTTGACATAAGTACGTTGGAAATGTATGTTTTGAAATGTGTTATCACGGTTTTAATTTTTATATAAAATTT

Fln Alignment:

Contig30352___MARALGVLLIFMAALYICMQGVRCATFEIQNECPFTVWAAGIPNVGGKQLERGQSWTVQFPAGTTGRFWGRTGCSFDGSGRGSCKTGDCGGLLNCQGSGSVPATLAEIAVNQFQNLDFYDVSLVDGFNLPLSIIPSNGQCTKSICSSDINSKCPAELKVPDGCKSACVAFNTPQYCCTGTFLENCPPSDYSRFFKRECPQAYSYAKDDTTSTFTCPGGTNYKVVFCGTGTSHE
D3IZ07_______________MARALGVLFTFMAALYICVQGVGCATFEIQNECPFTVWAAGTPGVGGKQLERGQSWTVQFPAGTTGRFWGRTGCSFDGSGKGSCKTGDCGGLLNCQGSGSVPATLAEFAVNQFQNLDFYDVSLVDGFNLPMSIIPSNGQCTKSICSSDINSKCPAELKVSDGCKSACVAFNTPQYCCTGSFLDNCPPSDYSRFFKKECPQAYSYAKDDTTSTFTCPGGTNYKVVFCGTGTSHE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
703		85		14	0.999981
806	11		88		1.0
827	12		87		1.0
947	90	10			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain