SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30329

Length: 1144 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30329

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tau class glutathione S-transferase n=2 Tax=Pinus RepID=D3YLT8_9CONI	-	-	0.0	44%
FL-Next	tr=Tau class glutathione S-transferase; Pinus brutia.	-	-	0.0	44%
Sma3	Probable glutathione S-transferase	-	-	1.635e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	8.049e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		8.049e-15	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		8.049e-15	%
Sma3	Drug metabolism - cytochrome P450	00982		8.049e-15	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	1.257e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		1.257e-07	%

Source	Gene names
Sma3	At1g78360; At1g78380; GST; GSTU2; GSVIVT00008584001; GSVIVT00022898001; GSVIVT00022906001; GSVIVT00023461001; GSVIVT00028452001; GSVIVT00028957001; GSVIVT00031741001; LOC_Os10g38160; LOC_Os10g38340; LOC_Os10g38489; LOC_Os10g38610; OSJNBa0034L04.24; OSJNBa

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	glutathione binding	GO:0043295	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	cellular response to water deprivation	GO:0042631	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D3YLT8

Fln msg: No stop codon before M and low homology subject,

Fln protein: MEDHVKLLTLWSSPFCTRVVLALEFKGVDYEIVESDTSNEMDQLLQLYNPALRTVPVLIHNGRAIPESLIILEYIDETWPSKDGVDFLPKDAYDRGLARFWADFIDKKVLSIIGGIVKTKGEEQEKAKVKLVEEFIRLDNTLATISLGQPFFSGDHIGFVDIVLAPYVSWLRAAECLVNLKLPDTSKCPHMNEWMEKIYEQPSVQKALPQPERLLEYARSLRKRNFGD*

Protein Length: 230

Fln nts: GGAGCTTAGCGCTTGTAGGGGTCTGGAGGGCAAATATTTC_-_ATGGAAGATCACGTAAAGCTTTTGACACTTTGGTCCAGCCCTTTCTGCACGAGAGTGGTTCTTGCCTTGGAGTTCAAGGGTGTCGATTATGAAATCGTGGAGAGCGATACTTCGAATGAAATGGACCAGCTTCTGCAGCTGTATAATCCTGCTCTGAGAACGGTGCCGGTGCTGATTCACAATGGCAGGGCCATACCGGAGTCGTTGATAATCTTAGAATATATCGACGAAACCTGGCCATCTAAAGATGGAGTTGATTTCTTGCCTAAAGATGCCTACGATAGGGGTTTGGCTAGGTTTTGGGCCGATTTCATTGATAAGAAGGTTCTTTCCATCATCGGTGGCATTGTCAAAACAAAAGGCGAGGAACAGGAAAAAGCAAAGGTCAAATTGGTGGAAGAATTCATACGACTGGACAATACGCTCGCCACTATCTCTCTGGGACAACCCTTCTTCTCTGGAGATCACATAGGGTTCGTTGATATCGTGCTTGCACCCTATGTATCCTGGCTGCGGGCAGCCGAATGCCTTGTAAATTTGAAGCTCCCTGATACTTCCAAATGCCCTCACATGAACGAGTGGATGGAGAAAATATACGAACAACCCAGTGTACAGAAAGCACTTCCCCAACCTGAGAGGTTGCTGGAATATGCCAGAAGCCTCCGGAAACGCAACTTCGGTGATTAAAAACACTTTACATTGGTTCATGTTTCATTTAAACACTTTACATTGGTTCATGTTTCATTTAATTCTCTCCTGTAAATACATGTAACTATGTCCTCGGTTTAGTCTGAGTTGATACAGTAGTTTCTTTATCAGTGCAAAGTTTAGTCTATATCTAGGTTGAAGCTTTATGAGCATCTTTGTCAGGTCTCAACCTTCCCTGAATTTGTTAATTCATAGAAAAGTTAAGCTACATATACAGTCAATTTATTAAATCTCTAGGGACTAAAGTATGTGTTTTGACCTGCGAAACCACCACATTATCCTAAATAAATTCTTAGATTTTGTCAATGGCTAAAACATGATAAACCACCTTATTGTATGTAACTCCTACAATGTAAATTAGTTCCCACTGAATTTTATCGATGGCTACATCATGTC

Fln Alignment:

Contig30329___MEDHVKLLTLWSSPFCTRVVLALEFKGVDYEIVESDTSNEMDQLLQLYNPALRTVPVLIHNGRAIPESLIILEYIDETWPSKDGVDFLPKDAYDRGLARFWADFIDKKVLSIIGGIV-KTKGEEQEKAKVKLVEEFIRLDNTLATISLG-QPFFSGDHIGFVDIVLAPYVSWLRAAECLVNLKLPDTSKCPHMNEWMEKIYEQPSVQKALPQPERLLEYARSLRKRNFG
D3YLT8_______________MENQVKVLNLWASPFGLRVLVGLEEKGVKYEYQEENLASKSELLLKM-NPIHKKIPVLIHNDKPVLESLIIVEYIDEAWPNTN--PFMPSSAYERARARFWADFVDKKIYDNGGALIMKCKGEAQEEAKRNMMEYLGLLEGALDELSGGMKPYFGGEKFGYMDIAFIPFASWFQAWEVMGNWKIPLETQFPRLHEWVNACMERESVKKVLPHPEKVAEFAMQMRQRFVG

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
452	87		12		0.992554
761	92			7	0.999532
762		92		7	0.999532
766		6		93	0.999364
768	93	6			0.999364
770	93			6	0.999364
771			6	93	0.999364
773	6		93		0.999364
774	6		93		0.999364
775	6			93	0.999364
782	7			92	0.999602
783	11			88	1.0
790	91		8		0.999766
800	8		92		0.999718
844	91	8			0.999766
891		34		65	1.0
895	65		34		1.0
925		50		50	1.0
943	64		35		1.0
983		81	18		0.999994
984	25		25	50	0.995533
985	75			25	0.996473
990		66		33	0.997452
993	66			33	0.997452
1011	33		66		0.997452
1013	33		66		0.997452
1029		66	33		0.997452
1052			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain