SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30313

Length: 1407 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30313 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RPM1-interacting protein 4 (RIN4) family protein n=2 Tax=Arabidopsis thaliana RepID=F4K694_ARATH	-	-	1.0e-15	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pathogenic type III effector avirulence factor Avr cleavage site	IPR008700	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04410.1	RPM1-interacting protein 4 (RIN4) family protein chr2:1534012-1535040 REVERSE LENGTH=73	5.0e-17	50%
RefSeq	Arabidopsis thaliana	NP_001190552.1	RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]	8.0e-21	57%
RefSeq	Populus trichocarpa	XP_002298875.1	predicted protein, partial [Populus trichocarpa]	8.0e-20	53%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	G %	T %	Probability
516		4	95	0.996252
517		95	4	0.996252
1041	88	11		0.923564
1042	11	88		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
516	528	TGA TGA TGA TGA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain