SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30282

Length: 927 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30282 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative beta 1,3-glucanase [Oryza sativa Japonica Group] gb\|ABF98103.1\| Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed [Oryza sativa Japonica Group] gb\|EEE63416.1\| hypothetical protein OsJ_18228 [Oryza sativa Japonica Group]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Glucan endo-1,3-beta-glucosidase, putative	-	-	3.125e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	2.52e-39	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		2.52e-39	%

Source	Gene names
Sma3	131L1.7; 134P10.1; At1g30080; At2g05790; At2g16230; At2g26600/T9J22.27; At2g39640; At3g55430; At4g34480; At5g42100; At5g42720; B1110B01.17; B29; CC2920; F12A12.90; GLC1; GSVIVT00000333001; GSVIVT00000495001; GSVIVT00002907001; GSVIVT00014622001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell communication	GO:0007154	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16230.1	O-Glycosyl hydrolases family 17 protein chr2:7035463-7038326 REVERSE LENGTH=503	49%
RefSeq	Arabidopsis thaliana	NP_179219.4	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002298356.1	glycoside hydrolase [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX81

Fln msg: your sequence is shorter than subject: 254 - 491

Fln protein: MFDAQLDAVYSAMKYLGYPGVDIVVAETGWPSAGDPTEAGVSLQNAITYNGNLIKHVTSMVGTPLRPNRYIKTYIFALFNEDLKAGPSSERNYGLFKPDMTMSYDVGLLQSRSAGPYPSPPRTGGPVTAPPTRTEGPVTAPGTGGPVTAPPTRTEGPVTAPPMGKVWCITKPGADEKTLQANLNYACGQGIDCRPIQPGGPCYSPNTVACHAAYAMNAYYQAKGRNSWNCDFAQTGAITTTDPSYGSCMYPAA*

Protein Length: 255

Fln nts: ATGTTTGATGCTCAGCTTGATGCAGTGTACTCGGCCATGAAATATCTGGGTTACCCTGGTGTTGATATAGTGGTGGCAGAAACGGGATGGCCATCTGCTGGGGATCCTACAGAGGCAGGGGTGAGCTTGCAGAATGCAATTACTTACAATGGTAATCTGATCAAACATGTGACCTCCATGGTAGGGACCCCATTGCGGCCAAATCGGTACATTAAGACCTATATTTTTGCCCTCTTCAATGAGGACCTGAAGGCAGGACCAAGCTCGGAGCGCAATTATGGGCTGTTTAAACCTGATATGACAATGTCTTATGATGTGGGCTTGCTGCAATCGCGGAGTGCAGGTCCATATCCTTCTCCTCCACGCACTGGTGGACCTGTTACAGCTCCTCCTACACGCACTGAGGGGCCTGTGACAGCTCCAGGCACCGGTGGGCCTGTTACAGCTCCTCCTACACGCACTGAGGGGCCTGTGACAGCTCCTCCTATGGGGAAAGTTTGGTGCATTACCAAGCCGGGAGCAGATGAGAAAACGTTGCAGGCAAATTTGAACTATGCTTGTGGACAAGGCATTGACTGTAGGCCTATTCAACCAGGAGGTCCTTGCTATTCACCAAATACAGTGGCCTGCCATGCTGCTTATGCCATGAATGCGTACTATCAGGCTAAGGGTCGGAATAGTTGGAACTGTGATTTTGCGCAGACTGGGGCTATTACTACCACAGATCCAAGCTATGGGAGCTGCATGTACCCAGCCGCGTAG___CATATAAATCAATCATAGTTTTACTATTTAGCCTGCTGATCAATATATATATTCGAAGATGTCATATCATATGACTAGAATTTAAGGGTATATATTTTCAAAGATGTCATACCATTGTATATTTGGATTTATTTTGTATGGATGGAGTTTATTTTGTCATTGTAG

Fln Alignment:

Contig30282___MFDAQLDAVYSAMKYLGYPGVDIVVAETGWPSAGDPTEAGVSLQNAITYNGNLIKHVTSMVGTPLRPNRYIKTYIFALFNEDLKAGPSSERNYGLFKPDMTMSYDVGLLQSRSAGPYPSPPRTGGPVTAPPTRTEXXXXXXXXXXXXXXXXTRTEGPVTAPPMGKVWCITKPGADEKTLQANLNYACGQGIDCRPIQPGGPCYSPNTVACHAAYAMNAYYQAKGRNSWNCDFAQTGAITTTDPSYGSCMY
A9NX81_______________MFDAQLDAVYSAMKYLGYTGIDIVVAETGWPSVGDPTEAGASLQNAIAYNGNLIKHVTSMAGTPLRPNRYIHTYIFSLFNEDLKPGPTSERNYGLFKADMTMAYDVGLLQSPSAGPSPA-PRTGGPVTATPPRA---------GGSVTAPPTRTGGPVTAPPTGKVWCITKPGADEKTLEANLNYACGQGIDCRPIQPGGPCYSPNTVACHAAYAMNAYYQAAGRNSWNCDFGQTGTLTSTDPSYGGCVY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
94	66	33			0.997452
104	66		33		0.997452
129	66		33		0.997452
169		66		33	0.997452
172			66	33	0.997452
177	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain