SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30226

Length: 613 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30226 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Succinate dehydrogenase cytochrome subunit 3 n=1 Tax=Cycas taitungensis RepID=E1CBI4_CYCTA	-	-	5.60519e-45	73%
FL-Next	sp=Succinate dehydrogenase cytochrome b560 subunit; Marchantia polymorpha (Liverwort) (Marchantia aquatica). Mitochondrion.	-	-	0.0	59%
Sma3	Succinate dehydrogenase subunit 3	-	-	5.405e-36	-

Source	Gene names
Sma3	POPTRDRAFT_252128; POPTRDRAFT_815726; SDH3; SDHC; YMF24; sdh3;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	succinate dehydrogenase activity	GO:0000104	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	succinate dehydrogenase (ubiquinone) activity	GO:0008177	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Succinate dehydrogenase/Fumarate reductase, transmembrane subunit	IPR000701	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Succinate dehydrogenase, cytochrome b556 subunit	IPR014314	-	-
Sma3	Succinate dehydrogenase, cytochrome b560 subunit	IPR014361	-	-
Sma3	Succinate dehydrogenase, cytochrome b subunit, conserved site	IPR018495	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G09600.1	SDH3-1 succinate dehydrogenase 3-1 chr5:2979220-2980527 FORWARD LENGTH=213	5.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_001078555.1	succinate dehydrogenase 3-1 [Arabidopsis thaliana]	5.0e-12	45%
RefSeq	Populus trichocarpa	XP_002321606.1	predicted protein, partial [Populus trichocarpa]	2.0e-15	47%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
334	76		23		1.0
382	83		16		0.999991
385	33		66		1.0
405	33		66		1.0
413	90		10		0.90298
415	40		60		1.0
425	50		50		1.0
480	90			10	0.90298
510	11		88		0.923564
587		20	40	40	1.0
588		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain