SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30190

Length: 1025 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30190 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	72%
FL-Next	sp=Probable phospholipid hydroperoxide glutathione peroxidase; Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis).	-	-	78%
Sma3	Glutathione peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-hydroperoxide glutathione peroxidase.	EC:1.11.1.12	-	1.4013e-45	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		1.4013e-45	%
Sma3	Glutathione peroxidase.	EC:1.11.1.9	-	3.907e-29	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		3.907e-29	%
Sma3	Arachidonic acid metabolism	00590		3.907e-29	%

Source	Gene names
Sma3	AP2_C11.1; AT2G31570; At1g63460; At2g25080; At2g31570; At2g43350; At2g48150; At3g63080; At4g11600; At4g31870; BarPHGPX; CHLREDRAFT_137012; CHLREDRAFT_143122; CHLREDRAFT_188373; CHLREDRAFT_206090; CSA; F11C18.70; F11L15.5; F13D4.40; F2K11.16; GHPOD; GP; GP

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	selenium binding	GO:0008430	Molecular Function	-
Sma3	phospholipid-hydroperoxide glutathione peroxidase activity	GO:0047066	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	cellular response to water deprivation	GO:0042631	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11600.1	ATGPX6, PHGPX, LSC803, GPX6 glutathione peroxidase 6 chr4:7010021-7011330 REVERSE LENGTH=232	76%
RefSeq	Arabidopsis thaliana	NP_192897.2	glutathione peroxidase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002299536.1	glutathione peroxidase [Populus trichocarpa]	79%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
126	80			20	0.995493
143	80			20	0.995493
147	80			20	0.995493
148	80			20	0.995493
363	66	33			1.0
376		33		66	1.0
406		10		90	0.90298
447	20	80			0.999996
822	36		63		1.0
903	44		55		1.0
906	5	94			0.998578
924	64		35		1.0
989	33		66		1.0
1031	33		66		0.997452
1034		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain