SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30093

Length: 1220 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30093 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NKR6_PICSI	-	-	0.0	94%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G22110.1	PAC1 20S proteasome alpha subunit C1 chr3:7792819-7793571 REVERSE LENGTH=250	80%
RefSeq	Arabidopsis thaliana	NP_188850.1	proteasome subunit alpha type-4 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002307867.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR6

Fln msg:

Fln protein: MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRVTSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTREEAAELALRVISKSMETTAISPEKLELAELFLLPSGEVKYQVYSPESLSKLLEKLNLAQPAAEAS*

Protein Length: 252

Fln nts: ATGGGGAGAATTAAAAACAAAAAGGTAAGAAGACCAAGTGGGGTTTAGAAAGTGCAACCCTTACCTTGCGGAACACTTCACCTTAACATTTTTTCCTTTGAAGCAACGAGCAGAGGTGGAAGCTCTGCTGATTGTTTGTAGCATCTGATCATCAGAACGAGTTCGAGTAAAACCCTAAAGTTTCCTGTTCAAA_-_ATGTCTCGGCGATACGATAGTAGGACTACGATCTTCTCTCCCGAAGGTCGGTTATACCAGGTTGAATATGCCATGGAAGCTATTGGCAATGCTGGAGCAGCCGTTGGAATTTTGGCAAAAGACGGGGTTATACTGGCTGGGGAGAAACGGGTTACTTCCAAGCTTCTTCAGACCTCCAAATCGACAGAGAAAATGTACAAGGTCGATGATCACGTTGCCTGTGCGGTCGCTGGAATCATGGCAGACGCAAACATTTTGATTAACACTGCCAGAGTTCAGGCACAGAGGTACACCTTTGCGTACCAAGAGCCCATACCTGTTGAACAGTTGGTTCAATCCCTCTGTGATACAAAGCAAGGGTACACGCAATTTGGAGGGCTTCGGCCCTTTGGTGTTTCCTTTCTGTTTGCAGGCTGGGATAAGAATTATGGTTTCCAGCTTTGTATGAGTGACCCGAGTGGAAATTATGGAGGATGGAAGGCTGCAGGGATTGGTGCAAACAATCCAGTTGCGCAGACTATGTTGAGACAGGAATACAAGGATGATATGACTAGAGAGGAGGCTGCTGAGCTTGCACTGAGGGTGATCAGCAAGAGCATGGAGACGACTGCTATCTCTCCCGAGAAGTTGGAACTAGCGGAGCTTTTTTTGTTGCCTTCTGGAGAAGTGAAGTACCAGGTTTACTCGCCCGAATCTCTGTCTAAGCTACTAGAGAAATTGAATCTCGCTCAGCCCGCAGCAGAGGCTTCTTAA___TTTAATTTGGAAATGCATTCTAGAATGCCATGCTTGAGCTTATTGCTGTGAAGCACAATAGATGCTGGAATATGTGGATCTGCCTAAACTGCTGAAGCTATAATGTTTAATGAACATGGTTGCTTTATTTTCATTCCATATGCTAAAGTGAATTTTCCTTCGCAGTTTCAGTTTTTTAAAGATGTGTTGGGCTATTCTGTTTATGTTTCCTTTGACATACTTAGTGAATTTGTGATATGGTGAATTGAAATTTTTTGGCCCAAGTCTTTTTATG

Fln Alignment:

Contig30093___MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRVTSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTREEAAELALRVISKSMETTAISPEKLELAELFLLPSGEVKYQVYSPXXXXXXXXXLNLAQPAAEAS
A9NKR6_______________MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGILAKDGVILAGEKRITSKLLQTSKSTEKMYKVDDHVACAVAGIMADANILINTARVQAQRYTFAYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLCMSDPSGNYGGWKAAGIGANNPVAQTMLRQEYKDDMTKEEAAELALKVISKSMETTAISPEKLELAELFLLPSGEVKYQVYSPESLSKLLEKLNLAQPVAEVS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
834	93	6			0.99903
835		6		93	0.99903
836	6			93	0.99903
1086	95			2	0.988836
1116	1	18		79	1.0
1118	2	97			0.97849
1120		3	1	95	0.911382
1122	95	4			0.995482
1123	95	4			0.995482
1124	95	4			0.995482
1125	2	4	93		0.979066
1126	6		93		0.999999
1127	93	2		4	0.983471
1132	92			2	0.991359
1142		14	85		1.0
1143	85	11	2		1.0
1144	85	11		2	1.0
1145	2	8	88		0.999999
1147		6	90	3	0.997544
1148		6		93	0.999453
1149		6		93	0.999453
1151	6	93			0.999453
1152			93	6	0.999453
1158		30		69	1.0
1161		8	92		0.999718
1173	15	84			0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain