SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30047

Length: 820 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30047 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heavy-metal-associated domain-containing protein [Arabidopsis thaliana] ref\|NP_001030928.1\| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] emb\|CAA71173.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAL36161.1\| unknown protein	-	-	4.0e-11	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01490.1	Heavy metal transport/detoxification superfamily protein chr1:180401-182066 REVERSE LENGTH=177	3.0e-15	47%
RefSeq	Arabidopsis thaliana	NP_171656.1	heavy-metal-associated domain-containing protein [Arabidopsis thaliana]	3.0e-15	47%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
97	14			85	0.993533
99	10	90			0.90298
672	8	91			0.999807
673	91		8		0.999807

SSRs (tot: 1)

Start position	End position	Sequence	Length
759	771	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain