SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30046

Length: 3042 nt

UniGene Fasta

>sp_v3.0_unigene30046
AAAAATCATTGCACGGATTAAACGACGAAGAAGACGCAAAAGCTCCCTGTCGTGGACGTCCGTCATACACCCCTCATTTGTCCGATGTGTGCCACGTATCCGACGTCCCTCGGATCCCCTGCGCCTAATTTATCCGGATTCACGGCGCTGGAGTAAACCAATAGCCATTTATTTAAAATAATCAGAACTTACTGGCTCGATTAGCGTCCTAAGCGGCCGTTCGTGTACACACTAGACCAGAGAGCAGGGACAGGGAGTAGGCTACATTGCAAAGAAAACGGCAGAGAGGGGCATGGGTGGGGTTTAGTTTTCATGGCAGTGGGATCATTTTCGGCAAACGGTCGGCCATGGCGAAATCTCGGAAGGCAACTCTTAGCAGGCAGGGCGTCCGCTCGGCATCCGACAGGCCCGCAGCTTCCCCGGCTTCGAACGGCGAGGAGGAGGAGGAGAGAAACGAGCTGCGAAGGAATCGTTTTCACGACCCTCGGTTAGGCCCGGATGTCCCGAACAGCGGGCCCAGTGCTACGCCTGCGTCGAGTTGGAAGGTCTACGAGAATCGATCATGCGATGTGTTCTCTGGCGCGGGCGCGGGGCGGAGGAAGCGTGGGAAAAGAAATGGCGGTAGTGATAATGATGATGAGGGACACAACGTTCGTCTTGTGCTTTCCGCTCGTAAACTGGCGGCCGTTCTGTGGCAGCTGCAGCAGCAGCCGGGAGCTTTGAAGCGCGTTCGAGATAGGAGAGGCATTCCGATTTCCAACGGCATTCGGCGTTTGCAGAAAGGCCAGCGAGCATTTCAGCCGGTTGATGCTTATATGGAGAATCATTATTCATCTAAATTTGTAGCAATGGGGTCAAACTCTCATCGAACTTCACAAAGACAAAAGGATGGAAGAATTAGTTTTTCAACCTCCGCTCCAGCTAATGAAACTTGTCTCGAGATTGATTCAGTTGGGCAACCTGCTGCGATCTCAAATGCTGGATTGGAAAAGGCAACAAAATGGGATTTCGGTGATAGAAAGACTTCAGCTGATGTTTTCAAAGCATACAACTGCTTCAAGATTGCGGAAGAGCAGCAGACTTCGAGTGTGTCTGTTGTCTCAGCTCTGAAAAAGGAGCTCGTCCAAGCTCGTCATCTGGTTCATGAGCTAGAGCATGCACAAAAATCCTCACGGAAAGAGGTAGACCGTTTCTTGAAAAAACTTGCAGAGGAGAGAGGCATATGGCAGAGCAAGGAACAAGAGAGAATCAAGGCAATTATCCGCACTATGAAGGAGGAACTGAACAATGAAAGGAAAGAAAAGAGAAGGATGGAAATACTTAATGGAAAACTAGCAAAAGAGCTTGGAGAGGCTAAAATTACGATAATGAGATCTTTGCAAGATCTTGAGAAGGAAAGGAAGGCGAGGCAGCTCATGGAGGATGTCTGTGATGAATTGGCAAGAGAGATTGGCGAAGACAAAGCTCAAGTGGAAGAACTAAAACTGGAATCTATAAAAGTTAGGGAAGAAGTTGAGGAAGAACGCAAAATGCTCCAGATGGCGGAGGTGTGGCGTGAAGAGAGGGTTCAGATGAAGCTGATAGAAGCAAAGCTGGCATTAGAAGAGAAGAGTTCAGCTTTAGATAAACTACGAGAAGATTTGGAAGCATTTATAAATTCTAAAATGACGTTACAAGGTAGTGGCACTGCCTCTGTAGCTGCTGCGGATATGCAAGATGCAGAATTGCTCAGAGAGGCTGCGAGTTCAATACAGGTTCAAGACATTAAGGAGTTCTCTTATCAGCCTCCAAATTCGGAGGATGTTTTCACTGCCTTTGGAGATTTGAACCCATTCAGAGTTAACAATGAGACATCTGATGCTAGGACTGGATGGGATCTAGAGGATGGCTTTTACAGCCCCAGGAGCCATACCTCTAAGATTCTCACAGTAGCTCCGGAGAGCCATGGATTCAATAGAAATTCAATAAGAAGCCATCAAGATATAAGAATCGGAGAAGAAGAAAGACATAAGCATGCCATGGGAGATGAAGACCAAAGAGAGGAAGAAAGCGACTGGGACCAGGCAAGTGAGGGAGATGAGCAGGAATCAAGCAGTTCTCCTCGAGAGAGCAAAACATCTTTGAATGGAGATGCAGCAGATGGTAGCTATACAGAAAGTGGAACAGATTGGGAAGAGAATGAAGATTCTGCAATTGTCATCGCAGAAATTGATTCCCACCCTACTACAGAAGGGCAATTGAAAACGAAAAATTCTCCTGCAGGGCAGTATGGGAGGCCCAACTCTGGAAAGGGGGATTGCTACAAGACAATTCCAGCAGAAAACAATATGCCTGTATGCACAAAGAGCTCAATATCTGTGACTTCTCCTGGCCGACAGTGTGTTGATGGGGCGTACAGTCCCTCCAATCTTGGGACATGGAGTTCACCAGATGCCAGCAATCCTCACATTACTAGAGGCATTAAGGGATTTATAGAGTGGCCAAGGGGTATTCAAAAGAACAGTCTGAAGGCCAAGCTTTTGGAAGCAAAAATGGAAAGCCAGAAAGCCCAGCTGAGACATGTTTTAAAACAAAGGCACTAATAACTGCGATTTTCCAAAGAGCACTGCATAAGGAGAAAAGTGATCTTCTACCTGAGACTGAGCTCTTAGAGATTAGAATACCAGAGTCTCAATGTTCACAGATGAAATTGTCTTCTCCGCAATATAGAATATTGGTAAACTGGAGCAAGCGATTGAAGCAGAGCCAGACTCAGGAGGTTAGGTCTGATGAGCAAATCTGAAGATGATGATAAATTTGGAGTTGCAATTTTTGGATAAATATTTCTGCTAGTAAACACTTTCAGAAGGGCTTCTTGTTTGGATTCAAGAGGTCCACCATATCCGTTATGGATTCTAGTCTGCTACTTATAGTGGGCATATGTGAAATAAATTCAAAATGGCTGTACCTTCAAATATGGGGTGCAGTTTTAATGGTAAAGGAAGACGGCTGTATTTTTTTATTTTTTCAGTAGAATCCCATGGGATGATTAACTCAAAAAAA

Ace file of the UniGene sp_v3.0_unigene30046

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin_tail_1 multi-domain protein	-	-	7.0e-08	25%
FL-Next	sp=Uncharacterized protein At5g41620; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%

Source	Gene names
Sma3	GSVIVT00010750001; Os04g0625000; OsI_20484; OsJ_19074; P0010D04.11; PHYPADRAFT_129776; PHYPADRAFT_146779; PHYPADRAFT_37197; PHYPADRAFT_48711; PHYPADRAFT_48753; PHYPADRAFT_48769; POPTRDRAFT_648968; POPTRDRAFT_887227; RCOM_0081860;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316766.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q66GQ2

Fln msg: your sequence is longer than subject: 745 - 623

Fln protein: MAKSRKATLSRQGVRSASDRPAASPASNGEEEEERNELRRNRFHDPRLGPDVPNSGPSATPASSWKVYENRSCDVFSGAGAGRRKRGKRNGGSDNDDEGHNVRLVLSARKLAAVLWQLQQQPGALKRVRDRRGIPISNGIRRLQKGQRAFQPVDAYMENHYSSKFVAMGSNSHRTSQRQKDGRISFSTSAPANETCLEIDSVGQPAAISNAGLEKATKWDFGDRKTSADVFKAYNCFKIAEEQQTSSVSVVSALKKELVQARHLVHELEHAQKSSRKEVDRFLKKLAEERGIWQSKEQERIKAIIRTMKEELNNERKEKRRMEILNGKLAKELGEAKITIMRSLQDLEKERKARQLMEDVCDELAREIGEDKAQVEELKLESIKVREEVEEERKMLQMAEVWREERVQMKLIEAKLALEEKSSALDKLREDLEAFINSKMTLQGSGTASVAAADMQDAELLREAASSIQVQDIKEFSYQPPNSEDVFTAFGDLNPFRVNNETSDARTGWDLEDGFYSPRSHTSKILTVAPESHGFNRNSIRSHQDIRIGEEERHKHAMGDEDQREEESDWDQASEGDEQESSSSPRESKTSLNGDAADGSYTESGTDWEENEDSAIVIAEIDSHPTTEGQLKTKNSPAGQYGRPNSGKGDCYKTIPAENNMPVCTKSSISVTSPGRQCVDGAYSPSNLGTWSSPDASNPHITRGIKGFIEWPRGIQKNSLKAKLLEAKMESQKAQLRHVLKQRH*

Protein Length: 746

Fln nts: AAAAATCATTGCACGGATTAAACGACGAAGAAGACGCAAAAGCTCCCTGTCGTGGACGTCCGTCATACACCCCTCATTTGTCCGATGTGTGCCACGTATCCGACGTCCCTCGGATCCCCTGCGCCTAATTTATCCGGATTCACGGCGCTGGAGTAAACCAATAGCCATTTATTTAAAATAATCAGAACTTACTGGCTCGATTAGCGTCCTAAGCGGCCGTTCGTGTACACACTAGACCAGAGAGCAGGGACAGGGAGTAGGCTACATTGCAAAGAAAACGGCAGAGAGGGGCATGGGTGGGGTTTAGTTTTCATGGCAGTGGGATCATTTTCGGCAAACGGTCGGCC_-_ATGGCGAAATCTCGGAAGGCAACTCTTAGCAGGCAGGGCGTCCGCTCGGCATCCGACAGGCCCGCAGCTTCCCCGGCTTCGAACGGCGAGGAGGAGGAGGAGAGAAACGAGCTGCGAAGGAATCGTTTTCACGACCCTCGGTTAGGCCCGGATGTCCCGAACAGCGGGCCCAGTGCTACGCCTGCGTCGAGTTGGAAGGTCTACGAGAATCGATCATGCGATGTGTTCTCTGGCGCGGGCGCGGGGCGGAGGAAGCGTGGGAAAAGAAATGGCGGTAGTGATAATGATGATGAGGGACACAACGTTCGTCTTGTGCTTTCCGCTCGTAAACTGGCGGCCGTTCTGTGGCAGCTGCAGCAGCAGCCGGGAGCTTTGAAGCGCGTTCGAGATAGGAGAGGCATTCCGATTTCCAACGGCATTCGGCGTTTGCAGAAAGGCCAGCGAGCATTTCAGCCGGTTGATGCTTATATGGAGAATCATTATTCATCTAAATTTGTAGCAATGGGGTCAAACTCTCATCGAACTTCACAAAGACAAAAGGATGGAAGAATTAGTTTTTCAACCTCCGCTCCAGCTAATGAAACTTGTCTCGAGATTGATTCAGTTGGGCAACCTGCTGCGATCTCAAATGCTGGATTGGAAAAGGCAACAAAATGGGATTTCGGTGATAGAAAGACTTCAGCTGATGTTTTCAAAGCATACAACTGCTTCAAGATTGCGGAAGAGCAGCAGACTTCGAGTGTGTCTGTTGTCTCAGCTCTGAAAAAGGAGCTCGTCCAAGCTCGTCATCTGGTTCATGAGCTAGAGCATGCACAAAAATCCTCACGGAAAGAGGTAGACCGTTTCTTGAAAAAACTTGCAGAGGAGAGAGGCATATGGCAGAGCAAGGAACAAGAGAGAATCAAGGCAATTATCCGCACTATGAAGGAGGAACTGAACAATGAAAGGAAAGAAAAGAGAAGGATGGAAATACTTAATGGAAAACTAGCAAAAGAGCTTGGAGAGGCTAAAATTACGATAATGAGATCTTTGCAAGATCTTGAGAAGGAAAGGAAGGCGAGGCAGCTCATGGAGGATGTCTGTGATGAATTGGCAAGAGAGATTGGCGAAGACAAAGCTCAAGTGGAAGAACTAAAACTGGAATCTATAAAAGTTAGGGAAGAAGTTGAGGAAGAACGCAAAATGCTCCAGATGGCGGAGGTGTGGCGTGAAGAGAGGGTTCAGATGAAGCTGATAGAAGCAAAGCTGGCATTAGAAGAGAAGAGTTCAGCTTTAGATAAACTACGAGAAGATTTGGAAGCATTTATAAATTCTAAAATGACGTTACAAGGTAGTGGCACTGCCTCTGTAGCTGCTGCGGATATGCAAGATGCAGAATTGCTCAGAGAGGCTGCGAGTTCAATACAGGTTCAAGACATTAAGGAGTTCTCTTATCAGCCTCCAAATTCGGAGGATGTTTTCACTGCCTTTGGAGATTTGAACCCATTCAGAGTTAACAATGAGACATCTGATGCTAGGACTGGATGGGATCTAGAGGATGGCTTTTACAGCCCCAGGAGCCATACCTCTAAGATTCTCACAGTAGCTCCGGAGAGCCATGGATTCAATAGAAATTCAATAAGAAGCCATCAAGATATAAGAATCGGAGAAGAAGAAAGACATAAGCATGCCATGGGAGATGAAGACCAAAGAGAGGAAGAAAGCGACTGGGACCAGGCAAGTGAGGGAGATGAGCAGGAATCAAGCAGTTCTCCTCGAGAGAGCAAAACATCTTTGAATGGAGATGCAGCAGATGGTAGCTATACAGAAAGTGGAACAGATTGGGAAGAGAATGAAGATTCTGCAATTGTCATCGCAGAAATTGATTCCCACCCTACTACAGAAGGGCAATTGAAAACGAAAAATTCTCCTGCAGGGCAGTATGGGAGGCCCAACTCTGGAAAGGGGGATTGCTACAAGACAATTCCAGCAGAAAACAATATGCCTGTATGCACAAAGAGCTCAATATCTGTGACTTCTCCTGGCCGACAGTGTGTTGATGGGGCGTACAGTCCCTCCAATCTTGGGACATGGAGTTCACCAGATGCCAGCAATCCTCACATTACTAGAGGCATTAAGGGATTTATAGAGTGGCCAAGGGGTATTCAAAAGAACAGTCTGAAGGCCAAGCTTTTGGAAGCAAAAATGGAAAGCCAGAAAGCCCAGCTGAGACATGTTTTAAAACAAAGGCACTAA___TAACTGCGATTTTCCAAAGAGCACTGCATAAGGAGAAAAGTGATCTTCTACCTGAGACTGAGCTCTTAGAGATTAGAATACCAGAGTCTCAATGTTCACAGATGAAATTGTCTTCTCCGCAATATAGAATATTGGTAAACTGGAGCAAGCGATTGAAGCAGAGCCAGACTCAGGAGGTTAGGTCTGATGAGCAAATCTGAAGATGATGATAAATTTGGAGTTGCAATTTTTGGATAAATATTTCTGCTAGTAAACACTTTCAGAAGGGCTTCTTGTTTGGATTCAAGAGGTCCACCATATCCGTTATGGATTCTAGTCTGCTACTTATAGTGGGCATATGTGAAATAAATTCAAAATGGCTGTACCTTCAAATATGGGGTGCAGTTTTAATGGTAAAGGAAGACGGCTGTATTTTTTTATTTTTTCAGTAGAATCCCATGGGATGATTAACTCAAAAAAA

Fln Alignment:

Contig30046___LVLSARKLAAVLWQLQQQPGALKRVRDRRGIPISNGIRRLQKGQRAFQPVDAYMENHYS-----------SKFVAMGSNSHRT----SQRQKDGR--ISFSTSAPANETCLEI---DSVGQPAAIS--NAGLEKATKWDFGDR---------KTSADVFKAYNCFKIAEEQQTXXXXXXXALKKELVQARHLVHELEHAQKSSRKEVDRFLKKLAEERGIWQSKEQERIKAIIRTXXXXXXXXXXXXXXXXILNGKLAKELGEAKITIMRSLQDLEKERKARQLMEDVCDELAREIGEDKAQVEELKLESI--XXXXXXXXXXXMLQMAEVWREERVQMKLIEAKLALEEKSSALDKLREDLEAFINSK
Q66GQ2_______________IVVSSRKLAAAFWEFHQYH--YKDEEDCSYSYLSSASAKMHRGPNGFAGASSRRQRHGKAVAVKENGLDLSQFLRDPSPDHQPDSAGSLRRQIGQMLIKHHQSIDRNNHALQPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRLEGGDTLNGKNRSVLDKLEVEIETFLQEK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1194		43		56	1.0
1357	80			20	0.995493
1358	80		20		0.995493
1359	80		20		0.995493
1360			20	80	0.995493
1442	75		25		0.996473
1804			50	50	1.0
1839	33		66		1.0
1893		33		66	1.0
2057		20		80	0.995493
2296	11		88		0.923564
2319	10	90			0.90298
2322	90			10	0.90298
2571	91		8		0.999766
2711		6	93		0.999153
2712	93			6	0.999153
2825		11		88	0.999937

SSRs (tot: 1)

Start position	End position	Sequence	Length
435	449	GAG GAG GAG GAG GAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain