SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29987

Length: 1372 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29987

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MazG domain containing protein	-	-	2.0e-08	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Xtp3a-related NTP pyrophosphatase	-	-	3.741e-09	-

Source	Gene names
Sma3	At3g25400; GSVIVT00000889001; GSVIVT00012955001; GSVIVT00016278001; GSVIVT00020296001; GSVIVT00033515001; MICPUCDRAFT_70691; MICPUN_113203; OSIGBa0111I14.3; OSIGBa0140J09.11; OSJNBb0070J16.14; OSJNBb0072M01.10; Os02g0479300; Os04g0346800; Os04g0515400; Os

Source	InterPros	Term	Type	Identity
Sma3	NTP pyrophosphohydrolase MazG, putative catalytic core	IPR004518	-	-
Sma3	EAR	IPR009039	-	-
Sma3	NTP Pyrophosphohydrolase MazG-related, RS21-C6	IPR011394	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G25400.1	" CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species	8.00001e-41	66%
RefSeq	Arabidopsis thaliana	NP_189167.2	uncharacterized protein [Arabidopsis thaliana]	9.99995e-41	66%
RefSeq	Populus trichocarpa	XP_002303005.1	predicted protein [Populus trichocarpa]	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADR7

Fln msg:

Fln protein: MNNGCAEALKESGESNVTLKNLRKKMAEFSRERDWDQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWDAADKEHLGEELSDVLLYLVRLADICGVDLGDAALRKIEKNGLKYPVQRSTDCALVYFGDDDGNNNNKV*

Protein Length: 143

Fln nts: ACTGCAGCTTCCAGATCAGAGTTGGAATGCTGTATCTGACTCTTCTTGACGAAATCTTTAAATTGTCCAGCTTCTTGACAGAAATGATCCATCTTACAAAATCTGTAAATTCTCCGTCTTCTTGACCTGAAGCTACATTCGGAGGGAAAGCGAGGTGGGATACCTTTACAGCCAGCGCTAGGCTGGTTTGCCTTTTGTTTGATTGAAACTTTTGTGCCGATAAAGATTCAAACCGCTGGCCTGTCATTTTAGTGAAGCTTTCGGAAATCTCGACCGACGAGGCAGCGGTTCAGGCTGGCGTAAGGGACTTTGCTTCTTGTTGCAGATCTCTACCTTGTAAATATCAGCGGTAGCCGTTTTGAGCCGGCGTTTATCTACTCTCTTCATTTCGGTTGGGAATATCAGTCAGACAGCAAG_-_ATGAATAACGGCTGCGCGGAAGCCCTGAAAGAGTCTGGCGAAAGCAACGTTACACTTAAAAATTTGCGTAAGAAAATGGCCGAGTTCTCAAGGGAGCGAGATTGGGATCAATTTCACAGCCCTCGCAACCTTCTCTTGGCTCTCGTAGGGGAGGTAGGCGAGCTGTCAGAGATCTTTCAGTGGAAAGGCGAAGTGCCAAAAGGACTTCCGGACTGGGACGCAGCCGACAAAGAACATCTGGGCGAAGAATTATCGGACGTTTTGCTATATTTAGTGAGACTCGCAGACATCTGTGGCGTGGACCTCGGAGACGCTGCGCTGAGAAAGATCGAGAAAAATGGGTTGAAATACCCCGTCCAACGGTCCACCGACTGCGCCCTTGTCTACTTCGGTGACGACGACGGCAACAACAATAATAAGGTTTGA___GGTCCGGGTTTCGAGGACTTTCACTGAACAGCAGAGTATCCCATTCTCTTGAACAGCAGAGTATTCCATTCTGTTGGCGCAGTTCTTATTGTTCTGTTTTTTCGTCGCTATTATGTATTTAATGTCCTTTTTTAACTAATACAGTCCAAGCAAGCTTCATAAAATCTCTACCGCCATGGTTTCTCAGAAGTTCAGGAATGGCGCTTACACCAAGGTTGAGCGGAGGGTACACGTAATAAGACAGGTCTGGTCAGGCTGACCTTAATTAGCTTGCAAAAACGCTACCATGTCTTAAGATTCCAGACACGAAGTATCCATGTTCAGCATCGTCCAGTGCACTCTGCACATTCCCAGTAAATGTGGAGATTTTCTTAAGGTTTCGTTAATATGAAGAAAATTTTACTCCATATGTTATTTGAATTGAATACATGCATACATCTGGAGTTTGATCCAATACAAGTGAAATTGTTATAATGGTATGTGACTTGGCTTTGAAGAAGGAATTAGTAACTTAACAATTTTACTCCAC

Fln Alignment:

Contig29987___ALKESGESNVTLKNLRKKMAEFSRERDWDQFHSPRNXXXXXXXXXXXXSEIFQWKGEVPKGLPDWDAADKEHLGEELSDVLLYLVRLADICGVDLGDAALRKIEKNGLKYPVQR
D5ADR7_______________AKEPSAGGGVTIEELQGKMAEFTRERNWDQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWNAAEKEHLGEELSDVLLYLVRLADICEVDLGEAALRKVKKNGLKYPVER

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
271		55		44	1.0
301		83		16	1.0
320			16	83	1.0
330		79		20	1.0
335		79	20		1.0
352		20	79		1.0
388	78		21		1.0
426	77		22		1.0
429	22		77		1.0
444		77	22		1.0
480	57		42		1.0
487	35		64		1.0
488			42	57	1.0
504		35		64	1.0
543		85		14	0.993533
565		16		83	0.994512
567			83	16	0.994512
569			83	16	0.994512
570			83	16	0.994512
572			66	16	0.988813
573			83	16	0.994512
575	83	16			0.994512
577		16	83		0.994512
579			83	16	0.994512
742		75	25		0.996473
750		75	25		0.996473
861			75	25	1.0
865		50		50	1.0
888	50	50			1.0
924	45		54		1.0
969	37		50		1.0
970	14			85	0.993533
972	16	83			0.994512
980	50	50			1.0
1096		25		75	0.996473
1159		14		85	1.0
1250	10	90			0.999898
1252	80	13		6	0.999961
1273		83		16	0.999991
1290			16	83	0.999991
1298	70		30		1.0
1302		87		12	0.992554
1307	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain