SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29929

Length: 2514 nt

UniGene Fasta

>sp_v3.0_unigene29929
AGCAAGGATTGTAATTGGCCCCCTGCGCCGCTACCTTGGGAGGGGGAGTTGGCACTGAGCTGTTTATTCCCACAAACTAGTTTCCTACCTTAAAATAAAATGCTCCTTCTACCCATTTAAACCCCATAAGCTCCTACACCAAGGAAGGAGAAAGACAGAGAGAAGCAGGCAGCTGACAATCACCGGGGATTTCTTCTCAAGCCTCCTCGTCGGTCGAGAGTTCGATCCGCGTAAAAGGCCTGAATTGTCATTTTGCCATACGATCAATCAATCCAAGTTCTCTGCTTCTTTTTTTTTAAATCACGACATGGCTGCCACTACAGAGGCTGCTACTGTTCCTGTTCATGTTGCTGTGCCGGCCGAAGTTCCTGCAAATGTTCATGTTGCTGTGCCGGCCGAAGCTCCTGCAAATGTTCCTGTCGAAGCTCCTGCAACGGAAGCCGTGAAGGTTGAGGGCGAAGCGGTGAAAACGTCAGATGTAGAGGCAGGGGCTTCTGTTGCTGAGGAAGGAAACCAGGAGCTGCGTTCTTCGTTCAAGGAGGAGAGCAACTTTGTGTCCGATTTGAAGGAATCGGAGAAAAAGGCTTTGCAAGAGTTGAGGGTTCGAGTCGAGGAAGCTCTCAAAAATAATGAATTCGTTGAACCTCCTCCTGCTCCGCCCAAGTCCAAGAGCACTGAAGGCGAAAAGACCGAGGGCGTAAAGGAGGTTATCGAAGTTGAAGAAGAAAAGAAGACGATCTCCGAAACAGAAGTGAAAGCCGAAGCCGGAGATGCTTCAAAAGACAAAACTCCAGTTGAGGAAACGAAAAGCACCCCTGCGGCTCCAGTTACTGAAACTACTGAAACGCCTCCGCCAGTCGAAACCCCCGCCGGGGCGCAGGGTGAAGTCCCCGCCACCGAAACTGCGGCGGAGGTAACCGAGGCTGCTCCCCCTGCTCCCCCGGAAGACATCTACCTGTGGGGAGTCCCTTTGGCGCCCAGCAAGGGCGATGAGCGCACAGACGTCGTGTTATTGAAATTCCTCCGTGCCAGGGACTTTAAAGTTAGCGATGCCTTTACTATGCTCAAGAACACGGTCCTATGGAGAAAGAAATTCGGAGTGGACGGCATACTGGAAGAGGATTTGGGGCATGATTGGGATGGGGTCGCCTATATGCATGGCTATGATAAGGAAGGGCATCCCGTCTGCTACAATGTTTACGGCGTTTTCCAAGACAATGAGCTCTACCAGAAGACCTTTGGCGATGAAACCAAGCGCGAGAAGTTCCTGCGATGGAGGGTTCAGCTTCTTGAAAAGGGCATCCAGGAGCAACTCAGTTTCAGTCCCGGGGGCGTTAGCTCCATGGTCCAAATCACCGATCTCAAAAATTCGGCATCTACTCTCGGCAAAAAGGATCTCAAACAGGCTGCCAATCAGATCCTCACCCTCCTGCAAGATAATTACCCTGAGTTCGTTGCCAAAAAGATTTTTGTCAATGCCTCGTGGTGGTACTTGGCTTATTATACCATGATATCTCACTTTGTCTCTCCAAGAACCAGTAGCAAGTTTGTTGCTGCCCGCCCTACCAAGGTGTCGGAGACCTTGTTCAAATATTTTTCTCCGGAATATGTACCAGTACAGTATGGAGGCCTGAGCCGAGTAAATGATCCCGATTTTAGCGCTGCCGAGGGTGGCGTTTCGGAGGTGACCCTCAAAGCAGGGAAACAGGTCATTGAGATTCCAGCCACAGAGGTGGGAAGGGCACTGCTTTGGGAGATTACGGTAGTAGGGTGGGACGTGAGCTACGGGGCACAGTTTGTTCCAAGTGCAGAAACGAGCTATACAGTGATTATTCACAAGACAAAGAAGTTTTCCCCCAATGAAGAACCTGTTCGTCATTCTTTCAAAATTGGAGAGCCAGGGAAGGTGGTGCTAACCGTTGAGAACAATTCGTCAAAGAGAAAGAAGATTCTTTACAGATCCAAAGTGATAAGCGCCTGACTCATCTCGCTCTGCCCATGCTATCACTGGCCGTAGCAGAGGGCCTGGCTCTGTAAATTGCAGAATTATTTTTACTATTCCTGGGTGTTGACATTTCTGGCGATGGGGGTAGGAATGCAAGTTAAGCATTTATTTGGCAGTATATTTGCGCATATATATATATATATATATATTTAGATAAGAGTCATAGACGTTGTGCACCTCATTGGGTAGCATCATTATTGGCACAGAGATTTGTAGGAAATAACTTGTATAGATTATATATACAAGGGATTTAGATTATTGGCACTTTTAGATTTGGCTTCGATTGATTTCCAGTCCAGATTCAAAAAAGAAAAAGAGAAAAGAAACGAGGAGCATCATGCAAGTTTCGATCCATCCTGCACATTTGGTTGCTGGGTTTTGTAAATTGGCTGTATACTGTCGGGGTTCGTTCATCCATCCAGATGTTAATTTTGTTCCAGAGATTTGAAATATTTGCTATTGTAAGGTTTGCGTTATAATAGATACAGATTATTGTCGCTTTCCAAAAA

Ace file of the UniGene sp_v3.0_unigene29929

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	2.0e-19	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Patellin-5	-	-	1.22e-15	-

Source	Gene names
Sma3	5E08; AT1G22530; AT1G30690; At1g22530; At1g30690; At1g72150; At1g72160; At3g51670; At4g09160; B1036C05.4; F12K8.13; GSVIVT00001818001; GSVIVT00001819001; GSVIVT00019216001; GSVIVT00028584001; GSVIVT00029827001; GSVIVT00035683001; GSVIVT00037411001; OSJNBa

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	lipid binding	GO:0008289	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3		IPR008273	-	-
Sma3	GOLD	IPR009038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein chr1:27153823-27155609 REVERSE LENGTH=490	57%
RefSeq	Arabidopsis thaliana	NP_177361.1	patellin-3 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002299019.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX3

Fln msg: your sequence is shorter than subject: 558 - 592

Fln protein: MAATTEAATVPVHVAVPAEVPANVHVAVPAEAPANVPVEAPATEAVKVEGEAVKTSDVEAGASVAEEGNQELRSSFKEESNFVSDLKESEKKALQELRVRVEEALKNNEFVEPPPAPPKSKSTEGEKTEGVKEVIEVEEEKKTISETEVKAEAGDASKDKTPVEETKSTPAAPVTETTETPPPVETPAGAQGEVPATETAAEVTEAAPPAPPEDIYLWGVPLAPSKGDERTDVVLLKFLRARDFKVSDAFTMLKNTVLWRKKFGVDGILEEDLGHDWDGVAYMHGYDKEGHPVCYNVYGVFQDNELYQKTFGDETKREKFLRWRVQLLEKGIQEQLSFSPGGVSSMVQITDLKNSASTLGKKDLKQAANQILTLLQDNYPEFVAKKIFVNASWWYLAYYTMISHFVSPRTSSKFVAARPTKVSETLFKYFSPEYVPVQYGGLSRVNDPDFSAAEGGVSEVTLKAGKQVIEIPATEVGRALLWEITVVGWDVSYGAQFVPSAETSYTVIIHKTKKFSPNEEPVRHSFKIGEPGKVVLTVENNSSKRKKILYRSKVISA*

Protein Length: 559

Fln nts: AGCAAGGATTGTAATTGGCCCCCTGCGCCGCTACCTTGGGAGGGGGAGTTGGCACTGAGCTGTTTATTCCCACAAACTAGTTTCCTACCTTAAAATAAAATGCTCCTTCTACCCATTTAAACCCCATAAGCTCCTACACCAAGGAAGGAGAAAGACAGAGAGAAGCAGGCAGCTGACAATCACCGGGGATTTCTTCTCAAGCCTCCTCGTCGGTCGAGAGTTCGATCCGCGTAAAAGGCCTGAATTGTCATTTTGCCATACGATCAATCAATCCAAGTTCTCTGCTTCTTTTTTTTTAAATCACGAC_-_ATGGCTGCCACTACAGAGGCTGCTACTGTTCCTGTTCATGTTGCTGTGCCGGCCGAAGTTCCTGCAAATGTTCATGTTGCTGTGCCGGCCGAAGCTCCTGCAAATGTTCCTGTCGAAGCTCCTGCAACGGAAGCCGTGAAGGTTGAGGGCGAAGCGGTGAAAACGTCAGATGTAGAGGCAGGGGCTTCTGTTGCTGAGGAAGGAAACCAGGAGCTGCGTTCTTCGTTCAAGGAGGAGAGCAACTTTGTGTCCGATTTGAAGGAATCGGAGAAAAAGGCTTTGCAAGAGTTGAGGGTTCGAGTCGAGGAAGCTCTCAAAAATAATGAATTCGTTGAACCTCCTCCTGCTCCGCCCAAGTCCAAGAGCACTGAAGGCGAAAAGACCGAGGGCGTAAAGGAGGTTATCGAAGTTGAAGAAGAAAAGAAGACGATCTCCGAAACAGAAGTGAAAGCCGAAGCCGGAGATGCTTCAAAAGACAAAACTCCAGTTGAGGAAACGAAAAGCACCCCTGCGGCTCCAGTTACTGAAACTACTGAAACGCCTCCGCCAGTCGAAACCCCCGCCGGGGCGCAGGGTGAAGTCCCCGCCACCGAAACTGCGGCGGAGGTAACCGAGGCTGCTCCCCCTGCTCCCCCGGAAGACATCTACCTGTGGGGAGTCCCTTTGGCGCCCAGCAAGGGCGATGAGCGCACAGACGTCGTGTTATTGAAATTCCTCCGTGCCAGGGACTTTAAAGTTAGCGATGCCTTTACTATGCTCAAGAACACGGTCCTATGGAGAAAGAAATTCGGAGTGGACGGCATACTGGAAGAGGATTTGGGGCATGATTGGGATGGGGTCGCCTATATGCATGGCTATGATAAGGAAGGGCATCCCGTCTGCTACAATGTTTACGGCGTTTTCCAAGACAATGAGCTCTACCAGAAGACCTTTGGCGATGAAACCAAGCGCGAGAAGTTCCTGCGATGGAGGGTTCAGCTTCTTGAAAAGGGCATCCAGGAGCAACTCAGTTTCAGTCCCGGGGGCGTTAGCTCCATGGTCCAAATCACCGATCTCAAAAATTCGGCATCTACTCTCGGCAAAAAGGATCTCAAACAGGCTGCCAATCAGATCCTCACCCTCCTGCAAGATAATTACCCTGAGTTCGTTGCCAAAAAGATTTTTGTCAATGCCTCGTGGTGGTACTTGGCTTATTATACCATGATATCTCACTTTGTCTCTCCAAGAACCAGTAGCAAGTTTGTTGCTGCCCGCCCTACCAAGGTGTCGGAGACCTTGTTCAAATATTTTTCTCCGGAATATGTACCAGTACAGTATGGAGGCCTGAGCCGAGTAAATGATCCCGATTTTAGCGCTGCCGAGGGTGGCGTTTCGGAGGTGACCCTCAAAGCAGGGAAACAGGTCATTGAGATTCCAGCCACAGAGGTGGGAAGGGCACTGCTTTGGGAGATTACGGTAGTAGGGTGGGACGTGAGCTACGGGGCACAGTTTGTTCCAAGTGCAGAAACGAGCTATACAGTGATTATTCACAAGACAAAGAAGTTTTCCCCCAATGAAGAACCTGTTCGTCATTCTTTCAAAATTGGAGAGCCAGGGAAGGTGGTGCTAACCGTTGAGAACAATTCGTCAAAGAGAAAGAAGATTCTTTACAGATCCAAAGTGATAAGCGCCTGA___CTCATCTCGCTCTGCCCATGCTATCACTGGCCGTAGCAGAGGGCCTGGCTCTGTAAATTGCAGAATTATTTTTACTATTCCTGGGTGTTGACATTTCTGGCGATGGGGGTAGGAATGCAAGTTAAGCATTTATTTGGCAGTATATTTGCGCATATATATATATATATATATATTTAGATAAGAGTCATAGACGTTGTGCACCTCATTGGGTAGCATCATTATTGGCACAGAGATTTGTAGGAAATAACTTGTATAGATTATATATACAAGGGATTTAGATTATTGGCACTTTTAGATTTGGCTTCGATTGATTTCCAGTCCAGATTCAAAAAAGAAAAAGAGAAAAGAAACGAGGAGCATCATGCAAGTTTCGATCCATCCTGCACATTTGGTTGCTGGGTTTTGTAAATTGGCTGTATACTGTCGGGGTTCGTTCATCCATCCAGATGTTAATTTTGTTCCAGAGATTTGAAATATTTGCTATTGTAAGGTTTGCGTTATAATAGATACAGATTATTGTCGCTTTCCAAAAA

Fln Alignment:

Contig29929___GEAVKTSDVEA------GASVAEEGNQELRSSFKEESNFVSDLKESEKKALQELRVRVEEALKNNEFVE
B8LQX3_______________GETVKAEVVEAVEANGTGAAESSPVIEPRVTSFKEESNFVSDLKESERKALQELKCRIEEAILKNEFSE

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
718		11	11	77	0.968132
1015		14		85	0.993533
1017	85			14	0.993533
1018	85	14			0.993533
1019	85		14		0.993533
1021			14	85	0.993533
1025		85		14	0.993533
1026		85	14		0.993533
1030		85		14	0.993533
1033		14	85		0.993533
1034			85	14	0.993533
1035		14	85		0.993533
1047	87	12			0.992554
1058			12	87	0.992554
1059	87		12		0.992554
1069	87	12			0.992554
1070			87	12	0.992554
1071	87	12			0.992554
1076	25		75		1.0
1176		13	86		0.999973
1178			86	13	0.999973
1180	86		13		0.999973
1182		86	13		0.999973
1183	13	86			0.999973
1185		13	86		0.999973
1187		85		14	0.999981
1188			13	86	0.999973
1193	86			13	0.999973
1196	86	13			0.999973
1199	13		86		0.999973
1679	10		90		0.90298
1681			10	90	0.90298
1682			10	90	0.90298
1683		90	10		0.90298
1940	91			8	0.999766
1941	91		8		0.999807
2160	25			25	1.0
2328	33		66		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2133	2154	AT AT AT AT AT AT AT AT AT AT AT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain