SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29922

Length: 1047 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29922

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar membrane ATPase subunit c'' [Citrus limon]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	0.0	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25610.1	ATPase, F0/V0 complex, subunit C protein chr2:10901585-10902494 REVERSE LENGTH=178	85%
RefSeq	Arabidopsis thaliana	NP_194979.1	ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002324273.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
125	16		83		0.994512
126			83	16	0.994512
127		83		16	0.994512
168	12		87		0.992554
204	87			12	0.992554
284	16	83			0.994512
363	33		66		0.997452
366		66		33	0.997452
636	87		12		0.992554
666		83		16	0.994512
668	16		83		0.994512
669		16	83		0.994512
670	16		83		0.994512
671			16	83	0.994512
684	80		20		0.995493
705			80	20	0.995493
706		80		20	0.995493
835			75	25	1.0
926	94		5		0.998744
947	91	8			0.999766

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain