SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29892

Length: 3764 nt

UniGene Fasta

>sp_v3.0_unigene29892
ATGTAGAAAAGCAGATACCTACGCATGCGTATGTAGTTTCCTGGGCTGGGTGACGTCGGTAGCCTTTCTTTCACCTCGGCCGCCAGAGGTGAGGGTTCCCTGCTGCACCGCCAAATATCAACACAACCACCTGACGAAGGTTTCCCCGCCTGTTGCCGAAAACTGAGAAACGGACCCCAGAATCTGGATTTCGTGCAAATTTTTTCCGTCAAAGCGTGTGAAGTTTTGCGTCCAGGGTTTCATTTTTCCCTGTAAACATTTAATTGGCTTTGAAAGCATTCAGTGAGAGGGCCAGGGAGCGAGCTGCTCGTGGTAATATTTCAGAGCCATTTATTAATTTATTGCTGGAGAAGTTTGTCACAGAAAACCAAGGATCTTGATTCGATTCAGCATATGAGGGCAGAAAATGGTGAACTCGCGGCATTGAGGGCAACTTTGAGATTTTTATATGCGATTTGTCATAAATTATTGGACGAGTGATGCTGCGCGCTCCTGTTCTTTGCGACAGCATGAAGGAAATGTTTTATTCTGTCTGTACTTGCTGACGAAGCAATTGAGGGTTTAAATTATTCAATATTAGGGTTTCCTCAGTGGAATTTAAAGACAATAAAGGTTTCTGGTATGAAAGCCCGGCCTTTGTTGCAGGCTTCTCGATGTATATGAGCTCCTGTACTTGAAATATTTAAACAACATTTGGATTATAACTTGCAATTTTAAGTAAAGTTATCCATTACTGTCCCTTTTAATATTATCTTTTGGTTTCAGGCGGTGGCTAGCTCTTCTCGGCCTTCTATTCAATTAACTGTTTTCTGTTTCATTTATGTAATAGTAACTGCAACACAAACATTCATAAAAGGATTCCCATTAAAAGCCCTTCTTCTTTTAGGAGAATATTTCTCCATCCCGTGGTTGCTTTTATAGTTAATACATTGTGAAAAAAAAAACTTCTATAAAATATCGTTGATAATTGCTAGTGAGCTTGATGGGGAGCCCCGGGCAAACAGTGACACAGAGTAATGGTCAATATTTGGGAGTGACGGAACCGATATCTCTCGGAGGTCCTTCGGAGTTCGATTATACCAAAACTGCTGAGCTCGAGAAGTTTCTTGTGAGTGCTGGTTTATATGAAAGTCAAGAAGAAGCTGTGCGCAGAGAAGAAGTGCTCGGGAGACTGGATCAGATTGTTAAGGTATGGGTTAGAAAGATAAGCAGAAGCAAGGGCTTCAGTGAGCAGGTTGTCCAGGAAGCCAATGCTAAGATTTTTACGTTTGGGTCTTACCGGCTTGGCGTTCATGGACCTGGTGCGGACATTGATACACTTTGTGTTGGGCCTCGGCATGCAACTCGAGAGGAGGATTTTTTTATTGAGCTTTATGAAATGCTAGCAGAAATGCCAGAAGTAACAGAGCTGCATCCTGTACCAGATGCACATGTCCCAATCATGAATTTTAAGTTCAATGGAATATCGATAGATCTACTTTATGCAAGACTTTCTCTTTGGGTGATTCCTGAAGATCTAGACATCTCCCAGGATTCTATACTCCGTAATGCTGATGAGCAGACTGTTCGAAGTCTTAATGGATGTAGAGTAACTGATCAGATTTTACGTTTGGTACCAAATATTCAGAATTTTCGAACCACACTTAGGTGTATGAAGCTTTGGGCAAAACGACGTGGTGTCTATTCAAATGTAGCAGGTTTTCTAGGGGGTGTTAATTGGGCATTACTTGTGGCCAGAATATGTCAGCTCTACCCAAATGCATTGCCTAGCATGTTGGTTTGCCGCTTTTTCCGAGTATATACCCAGTGGCGCTGGCCAAACCCTGTCATGCTTTGTGCTATTGAAGAGGGTCCACTAGGCCTTCCTGTTTGGGATCCACGGAAAAATCCTCGTGACAGGCTTCATCAGATGCCTATAATTACCCCAGCATATCCCTGCATGAATTCAAGTTATAATGTGTCATCAAGTACTCTACGTGTTATGACGGAAGAATTTCAGAGAAGCAATCAGATTTGTGAGGAACTGGAGTTGAACAAAGTTGGTTGGAATATTCTCTTTGAGCCTTATCCGTTCTTCGAAGCTTACAAAAATTATTTAGAAATAGACATATCTGCAGAAGGAGCAGATGATCTACGGAAATGGAAAGGCTGGATTGAATCTCGTCTTCGTTTACTCACTTTAAAAATTGAAAGACAAACATTTGGCATGCTTCAGTGTCATCCACACCCGGATGACTTTTCAGATCCGCAAAGGCCATATCATTGTTGTTTCTTTATGGGCTTGCAGCGTAAACAAGGTATGCCCATCCAAGAAGGAGAACAGTTTGACATAAGGGTAACTGTGGATGAATTCAGGCATTCTGTCAAAATGTACACACTGTGGAAACCGGGCATGGAGATTAATGTTTCTCATATTAAGCGGAGGAGTATTCCCTTATTTGTTTTCCCAGGTGGTGTCCGCCCTCCACGGACAACAAAAATGTCAGGAACAGCTGGGAGACCAAACGCTGTTCCTAGTACAAGAGTTCCTGTTTTGAGTCATGTAGCAAAAAGTGATACAGGTTTGCCAGATGATGAGTTTGATGGGATTTCAGGAGAAGTTACCAGCATGGGAAAAAGAAAAAGGGATAGAGCAAATGAAGAACTTGTAGCCTCAAAGAGGGCTTCCATGTTACCCCTTGCTAATGGTACTTTAACATCAAATTCTGAAATAGTAATTGCCCCTGCTGAACCTGTTGCAATACAAACTTCACTGACTGCTGAGGAAGCTGCCATCACGAAGATAACATCTGGTCAAGGTGATGGATTTGGGTCACCTGTTGAAGAGCTGGATGAACTTGATGAATATACCACATTTGTTCCGATGAAGACTATTTCAGAAGAGCAGCAGAAATCGATGGTTGATACTGTGAAGTCATGTCCTAGAAATGGACAGCCTAAAGCAATAGCCCATTCTGGGTCACCTGTGGACAAATGTGAAAATGGAAGTGTAGAAGAACTCGAGCCTGTAGAATTACCTGGTTCAGGAATTATTTTATCCAACTCTAAAGCTGAAACTCAACGAAAACCTTTAATCAGGTTAAATTTGGCTTCATCAAGGAACAAGACCACCGATGCTTAGCATTTCAGGAGTGAACTTTATTATCAGATTTGAGTAATTCCGAATTGATCAACATCAATGTTTATAACACGTGGAATAAATACCTGGGTAGCAGAATATTCAGTGGCCCTCATATTCTGAGTGCACATGCATATAGGAAATACGGAAGGACTTTTCTGGCAAAGTTTCTGTCAGAGCTAAAGTGAATAGTCAGTTAATGTGGAGAATATCCAGGGTCCAATTAATGTGGAGCATAGTCTTGAAAGCAGATGCTCGCGAAAACCCATAGTTCATGATGGTTAGATTGTAATATGGTGCAAAATAAGCTGACCTTTGTGAAATTATTATGCGCAGTCAGTTTAAGGGCTTTCATAAAATGGCCTGCTGCATAGGCAGGCACTGTTATACCCGTCTTTTTGTTTGATACATTTTGGCTCTACTGATAATTAGAGAACTAGCGGGTGTATAAACACAATTTTCCTTTTAGATGCTTCGGACATGGTTATCATGCTTTTATTTACTTTTTCCATGTATAATACACCATCTGAGCTCCTGATACAGTGGACAATCATTGATATTTGCTTCGGTTGTCAACGATCTCCTCAAAATCTCTAATATGCAGAGGATTTTACATACGTAATTTCATGGCTTGGCGAAACAAAAA

Ace file of the UniGene sp_v3.0_unigene29892

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17980.1	PAPS1 poly(A) polymerase 1 chr1:6187742-6191418 REVERSE LENGTH=713	59%
RefSeq	Arabidopsis thaliana	NP_173240.2	poly(A) polymerase 1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002322074.1	predicted protein, partial [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY2

Fln msg:

Fln protein: MGSPGQTVTQSNGQYLGVTEPISLGGPSEFDYTKTAELEKFLVSAGLYESQEEAVRREEVLGRLDQIVKVWVRKISRSKGFSEQVVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFIELYEMLAEMPEVTELHPVPDAHVPIMNFKFNGISIDLLYARLSLWVIPEDLDISQDSILRNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGVNWALLVARICQLYPNALPSMLVCRFFRVYTQWRWPNPVMLCAIEEGPLGLPVWDPRKNPRDRLHQMPIITPAYPCMNSSYNVSSSTLRVMTEEFQRSNQICEELELNKVGWNILFEPYPFFEAYKNYLEIDISAEGADDLRKWKGWIESRLRLLTLKIERQTFGMLQCHPHPDDFSDPQRPYHCCFFMGLQRKQGMPIQEGEQFDIRVTVDEFRHSVKMYTLWKPGMEINVSHIKRRSIPLFVFPGGVRPPRTTKMSGTAGRPNAVPSTRVPVLSHVAKSDTGLPDDEFDGISGEVTSMGKRKRDRANEELVASKRASMLPLANGTLTSNSEIVIAPAEPVAIQTSLTAEEAAITKITSGQGDGFGSPVEELDELDEYTTFVPMKTISEEQQKSMVDTVKSCPRNGQPKAIAHSGSPVDKCENGSVEELEPVELPGSGIILSNSKAETQRKPLIRLNLASSRNKTTDA*

Protein Length: 714

Fln nts: ATGTAGAAAAGCAGATACCTACGCATGCGTATGTAGTTTCCTGGGCTGGGTGACGTCGGTAGCCTTTCTTTCACCTCGGCCGCCAGAGGTGAGGGTTCCCTGCTGCACCGCCAAATATCAACACAACCACCTGACGAAGGTTTCCCCGCCTGTTGCCGAAAACTGAGAAACGGACCCCAGAATCTGGATTTCGTGCAAATTTTTTCCGTCAAAGCGTGTGAAGTTTTGCGTCCAGGGTTTCATTTTTCCCTGTAAACATTTAATTGGCTTTGAAAGCATTCAGTGAGAGGGCCAGGGAGCGAGCTGCTCGTGGTAATATTTCAGAGCCATTTATTAATTTATTGCTGGAGAAGTTTGTCACAGAAAACCAAGGATCTTGATTCGATTCAGCATATGAGGGCAGAAAATGGTGAACTCGCGGCATTGAGGGCAACTTTGAGATTTTTATATGCGATTTGTCATAAATTATTGGACGAGTGATGCTGCGCGCTCCTGTTCTTTGCGACAGCATGAAGGAAATGTTTTATTCTGTCTGTACTTGCTGACGAAGCAATTGAGGGTTTAAATTATTCAATATTAGGGTTTCCTCAGTGGAATTTAAAGACAATAAAGGTTTCTGGTATGAAAGCCCGGCCTTTGTTGCAGGCTTCTCGATGTATATGAGCTCCTGTACTTGAAATATTTAAACAACATTTGGATTATAACTTGCAATTTTAAGTAAAGTTATCCATTACTGTCCCTTTTAATATTATCTTTTGGTTTCAGGCGGTGGCTAGCTCTTCTCGGCCTTCTATTCAATTAACTGTTTTCTGTTTCATTTATGTAATAGTAACTGCAACACAAACATTCATAAAAGGATTCCCATTAAAAGCCCTTCTTCTTTTAGGAGAATATTTCTCCATCCCGTGGTTGCTTTTATAGTTAATACATTGTGAAAAAAAAAACTTCTATAAAATATCGTTGATAATTGCTAGTGAGCTTG_-_ATGGGGAGCCCCGGGCAAACAGTGACACAGAGTAATGGTCAATATTTGGGAGTGACGGAACCGATATCTCTCGGAGGTCCTTCGGAGTTCGATTATACCAAAACTGCTGAGCTCGAGAAGTTTCTTGTGAGTGCTGGTTTATATGAAAGTCAAGAAGAAGCTGTGCGCAGAGAAGAAGTGCTCGGGAGACTGGATCAGATTGTTAAGGTATGGGTTAGAAAGATAAGCAGAAGCAAGGGCTTCAGTGAGCAGGTTGTCCAGGAAGCCAATGCTAAGATTTTTACGTTTGGGTCTTACCGGCTTGGCGTTCATGGACCTGGTGCGGACATTGATACACTTTGTGTTGGGCCTCGGCATGCAACTCGAGAGGAGGATTTTTTTATTGAGCTTTATGAAATGCTAGCAGAAATGCCAGAAGTAACAGAGCTGCATCCTGTACCAGATGCACATGTCCCAATCATGAATTTTAAGTTCAATGGAATATCGATAGATCTACTTTATGCAAGACTTTCTCTTTGGGTGATTCCTGAAGATCTAGACATCTCCCAGGATTCTATACTCCGTAATGCTGATGAGCAGACTGTTCGAAGTCTTAATGGATGTAGAGTAACTGATCAGATTTTACGTTTGGTACCAAATATTCAGAATTTTCGAACCACACTTAGGTGTATGAAGCTTTGGGCAAAACGACGTGGTGTCTATTCAAATGTAGCAGGTTTTCTAGGGGGTGTTAATTGGGCATTACTTGTGGCCAGAATATGTCAGCTCTACCCAAATGCATTGCCTAGCATGTTGGTTTGCCGCTTTTTCCGAGTATATACCCAGTGGCGCTGGCCAAACCCTGTCATGCTTTGTGCTATTGAAGAGGGTCCACTAGGCCTTCCTGTTTGGGATCCACGGAAAAATCCTCGTGACAGGCTTCATCAGATGCCTATAATTACCCCAGCATATCCCTGCATGAATTCAAGTTATAATGTGTCATCAAGTACTCTACGTGTTATGACGGAAGAATTTCAGAGAAGCAATCAGATTTGTGAGGAACTGGAGTTGAACAAAGTTGGTTGGAATATTCTCTTTGAGCCTTATCCGTTCTTCGAAGCTTACAAAAATTATTTAGAAATAGACATATCTGCAGAAGGAGCAGATGATCTACGGAAATGGAAAGGCTGGATTGAATCTCGTCTTCGTTTACTCACTTTAAAAATTGAAAGACAAACATTTGGCATGCTTCAGTGTCATCCACACCCGGATGACTTTTCAGATCCGCAAAGGCCATATCATTGTTGTTTCTTTATGGGCTTGCAGCGTAAACAAGGTATGCCCATCCAAGAAGGAGAACAGTTTGACATAAGGGTAACTGTGGATGAATTCAGGCATTCTGTCAAAATGTACACACTGTGGAAACCGGGCATGGAGATTAATGTTTCTCATATTAAGCGGAGGAGTATTCCCTTATTTGTTTTCCCAGGTGGTGTCCGCCCTCCACGGACAACAAAAATGTCAGGAACAGCTGGGAGACCAAACGCTGTTCCTAGTACAAGAGTTCCTGTTTTGAGTCATGTAGCAAAAAGTGATACAGGTTTGCCAGATGATGAGTTTGATGGGATTTCAGGAGAAGTTACCAGCATGGGAAAAAGAAAAAGGGATAGAGCAAATGAAGAACTTGTAGCCTCAAAGAGGGCTTCCATGTTACCCCTTGCTAATGGTACTTTAACATCAAATTCTGAAATAGTAATTGCCCCTGCTGAACCTGTTGCAATACAAACTTCACTGACTGCTGAGGAAGCTGCCATCACGAAGATAACATCTGGTCAAGGTGATGGATTTGGGTCACCTGTTGAAGAGCTGGATGAACTTGATGAATATACCACATTTGTTCCGATGAAGACTATTTCAGAAGAGCAGCAGAAATCGATGGTTGATACTGTGAAGTCATGTCCTAGAAATGGACAGCCTAAAGCAATAGCCCATTCTGGGTCACCTGTGGACAAATGTGAAAATGGAAGTGTAGAAGAACTCGAGCCTGTAGAATTACCTGGTTCAGGAATTATTTTATCCAACTCTAAAGCTGAAACTCAACGAAAACCTTTAATCAGGTTAAATTTGGCTTCATCAAGGAACAAGACCACCGATGCTTAG___CATTTCAGGAGTGAACTTTATTATCAGATTTGAGTAATTCCGAATTGATCAACATCAATGTTTATAACACGTGGAATAAATACCTGGGTAGCAGAATATTCAGTGGCCCTCATATTCTGAGTGCACATGCATATAGGAAATACGGAAGGACTTTTCTGGCAAAGTTTCTGTCAGAGCTAAAGTGAATAGTCAGTTAATGTGGAGAATATCCAGGGTCCAATTAATGTGGAGCATAGTCTTGAAAGCAGATGCTCGCGAAAACCCATAGTTCATGATGGTTAGATTGTAATATGGTGCAAAATAAGCTGACCTTTGTGAAATTATTATGCGCAGTCAGTTTAAGGGCTTTCATAAAATGGCCTGCTGCATAGGCAGGCACTGTTATACCCGTCTTTTTGTTTGATACATTTTGGCTCTACTGATAATTAGAGAACTAGCGGGTGTATAAACACAATTTTCCTTTTAGATGCTTCGGACATGGTTATCATGCTTTTATTTACTTTTTCCATGTATAATACACCATCTGAGCTCCTGATACAGTGGACAATCATTGATATTTGCTTCGGTTGTCAACGATCTCCTCAAAATCTCTAATATGCAGAGGATTTTACATACGTAATTTCATGGCTTGGCGAAACAAAAA

Fln Alignment:

Contig29892___MGSPGQTVTQSNGQYLGVTEPISLGGPSEFDYTKTAELEKFLVSAGLYESQEEAVRREEVLGRLDQIVKVWVRKISRSKGFSEQVVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFIELYEMLAEMPEVTELHPVPDAHVPIMNFKFNGISIDLLYARLSLWVIPEDLDISQDSILRNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGVNWALLVARICQLYPNALPSMLVCRFFRVYTQWRWPNPVMLCAIEEGPLGLPVWDPRKNPRDRLHQMPIITPAYPCMNSSYNVSSSTLRVMTEEFQRSNQICEELELNKVGWNILFEPYPFFEAYKNYLEIDISAEGADDLRKWKGWIESRLRLLTLKIERQTFGMLQCHPHPDDFSDPQRPYHCCFFMGLQRKQGMPIQEGEQFDIRVTVDEFRHSVKMYTLWKPGMEINVSHIKRRSIPLFVFPGGVRPPRTTKMSGTAGRPNAVPSTRVPVLSHVAKSDTGLPDDEFDGISGEVTSMGKRKRDRANEELVASKRASMLPLANGTLTSNSEIVIAPAEPVAIQTSLTAEEAAITKITSGQGDGFGSPVEELDELDEYTTFVPMKTISEEQQKSMVDTVKSCPRNGQPKAIAHSGSPVDKCENGSVEELEPVELPGSGIILSNSKAETQRKPLIRLNLASSRNKTTDA
B8LRY2_______________MGSPGQTATQSNGQYLGVTEPISLGGPSEFDYIKTAELEKFLVSAGLYESQEEAVRREEVLGRLDQIVKVWVRKISRNKGFGEQVVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFIELYEMLADMPEVTELHPVPDAHVPVMKFKFNGISIDLLYAKLSLWVIPEDLDISQDSILRNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGVNWALLVARICQLYPNALPSMLVCRFFRVYTQWRWPNPVMLCAIEEGPLGLPVWDPRKNPRDRLHQMPIITPAYPCMNSSYNVSSSTLRVMTEEFQRSNQICEELELNKVCWNILFETYPFFEAYKNYLEIDISAEGADDLRKWKGWTESRLRLLTLKIERQTFGMLQCHPHPDDFSDPQRPYHCCFFMGLQRKQGMPIQEGEQFDIRVTVDEFRHSVKMYTLWKQGMEINVSHIRRRNIPLFVFPGGVRPPRTTKMLGTAGRPNAVPSTGVPVLSHTAKSDTGLPDDELDGVSGEVTSMVKRKRDRANEELVASKRPSVLPLANGTKTSNSERGIAPAEPIAIQASQTAEEVAITKITSGQGDGFGSPVEELDELDEYTTFVPMKAILEEQQKSIVDSVSSCPRNGQPKELALSGPHLDKYENGSVEELEPVELPGSGIIVSNSKAETQRKPLIRLNLASSRNKTTNA

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
64		66		33	0.997452
523		80		20	0.999996
699		3		96	0.988939
702		1	3	94	0.951749
708	4		93		0.970804
752	11			88	0.923564
754	11			88	0.923564
755			11	88	0.923564
756	11			88	0.923564
758		42	57		1.0
847	16			83	0.994512
849		83		16	0.994512
851		25		75	0.996473
1929	90		10		0.90298
1989	12		87		0.992554
2066	14	85			0.993533
2069	83		16		0.994512
2269		16		83	0.994512
2627	60		40		1.0
2819	75		25		0.996473
3169	90		10		0.999898
3540	40	60			1.0
3542		80		20	0.995493
3759	25		75		0.996473
3761		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain